Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15820 160 / 2e-43 unknown protein AT3G61780 71 / 1e-12 EMB1703 embryo defective 1703 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043415 [exp] 720 / 0 AT4G15820 199 / 9e-58 unknown protein Lus10004004 [exp] 69 / 5e-12 AT3G61780 671 / 0.0 embryo defective 1703 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G222000 [exp] 303 / 6e-96 AT4G15820 156 / 7e-42 unknown protein Potri.014G099100 [exp] 66 / 5e-11 AT3G61780 805 / 0.0 embryo defective 1703 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034169 pacid=23154870 polypeptide=Lus10034169 locus=Lus10034169.g ID=Lus10034169.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTTATCGCGCCAGCCTCCCCTTCCTCTTACCGCCGCCTGTAACCACCACTCCCACTGGCGGATTCCGACTGAACCATATCCTCTCAGCTT CTGCCTCCCTGTCGCTGCCTTCCAAGGCGCGACGAAGGAAAAACTACTTGCGTACTAAGATCCTCAAAACCCTAACTAAACCCCTGCCAACAATTCCTCC CCCCGAGATAGCCCCAGCTGAACCACTACTTCCCGTTCCTACTCCACCTCAGTCGGTATCTGTTTCCGATGAATCTTTAGATGAAGCGACAATTGGGGTG GTTTCCCCCGCCGGAGAGATGGACGAAGTTGAGAGCCTTCAAGTCTCCGATACTGTTGACAATGCTGGAAAATTAGGTGGCATAGTCGGTAAAATATCTG CGAATTCTATATTGGTTTTCGTTGGTTTTGTGTTTGGATTCATTGTACTGGAGACCGTAGTTGTTGGGTTGTTGTTTGGGACTTCCAAGAAAGACGATAG GCTGAAAAGTTCAGGTAACGGGAACAATGCTCTTGTGAGTGAGAATGGAAATGAGAAGTTGGGGTCTCCATTTGGGAATGAGGTCGAATTAGGAGAGAAG ATCAGTGAGATTAGGGCAATCGCTCGAGAGGCTAGAGAGAGTGAGAGGAAGAAGTTGCCGAAAGGTGAGCAGGAGATTGGGATAGAGAAGGAAGTGAGTG CTCGTTTAGTGAAGTTGCAGAAGAAACTGGAGTCCAAGAAAGATGTGATTCCTGGATCACTTATCAATTCTCTCGGGTTGTTTGGTAATGGCGAAGATGA TTCCAACAGCATTGACGTCTCTATAGAAGATGAGGAACCTGTGCCATTGATGTTCAAGAAAAAACATAGATTTAGAAGCCCTTCAGTAAAGGCCAGGAGT ACCCCAAAGGGATTCTTGGGTTCGAAAGATTCTAACGGTGCAGTTAAAGGTAATATGAATGGTGCATCGAGAAATAGTGGTGTTGGGGCTACTAGGAAGG AAAAGGGGATGAAAGCTGGAAGTTCACATACGAGTTCATTGAGAAATGGTGAGACTGTTGCTCCAAAGGAGGAGAATTTGAGAAACAAAACTGAATCTGG TGCTGTCCAGGGGGGCGCTGAAGAGATATCAGTAGCTGAAGCTACCAATTCACAGAAAGGATGTATCGAGGATTTGGGTATGGCCAAAGGGAAAAAGAGA TCCAACGAAAACGCCAATGGTGTAGATTCCTTGAGTCCTGTGAAAAACAACTTGAAGGATAAGAGGTCAGCTATGGCGCCGGACATTTGGTGGTCAAAGC TTCCTTATGTTTTGGCTATACTTCTGCGCCGGGCCGAACAGGAAGGAGAAGGGGGGTTTTATGTTATACAACATAGTCCAGCGGCAGCTGAGATGAGAAA CTCATACACTATTGCATTTCAAGATCGTTCTGATGCAAATAACTTTTGTTTCTTACTGGAATCATTCTTTGAGGGGCTGGAAGACTTGAGTGTTGATATC GTTCCACTGCCAGTAAGGGAACTGCACGAGGCGGTGAAATCTGAGTCGAAGAAAGTACTTGTTGTCAGGAAAGGGCAACTTAAGCTTTATGCTGGCCAGC CATTTGAAGAAGTTGAAATGACTTTGAGGTCCATGATTGAACAGAACCAGAGCATGTGA
AA sequence Show only first row Show all	>Lus10034169 pacid=23154870 polypeptide=Lus10034169 locus=Lus10034169.g ID=Lus10034169.BGIv1.0 annot-version=v1.0 MAAAYRASLPFLLPPPVTTTPTGGFRLNHILSASASLSLPSKARRRKNYLRTKILKTLTKPLPTIPPPEIAPAEPLLPVPTPPQSVSVSDESLDEATIGV VSPAGEMDEVESLQVSDTVDNAGKLGGIVGKISANSILVFVGFVFGFIVLETVVVGLLFGTSKKDDRLKSSGNGNNALVSENGNEKLGSPFGNEVELGEK ISEIRAIAREARESERKKLPKGEQEIGIEKEVSARLVKLQKKLESKKDVIPGSLINSLGLFGNGEDDSNSIDVSIEDEEPVPLMFKKKHRFRSPSVKARS TPKGFLGSKDSNGAVKGNMNGASRNSGVGATRKEKGMKAGSSHTSSLRNGETVAPKEENLRNKTESGAVQGGAEEISVAEATNSQKGCIEDLGMAKGKKR SNENANGVDSLSPVKNNLKDKRSAMAPDIWWSKLPYVLAILLRRAEQEGEGGFYVIQHSPAAAEMRNSYTIAFQDRSDANNFCFLLESFFEGLEDLSVDI VPLPVRELHEAVKSESKKVLVVRKGQLKLYAGQPFEEVEMTLRSMIEQNQSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15820			unknown protein		Lus10034169 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	3.2	0.7996
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	6.3	0.7882
AT4G10620			P-loop containing nucleoside t...		Lus10016692 [exp]	6.9	0.7853
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10035676 [exp]	8.7	0.7824
					Lus10029579 [exp]	11.9	0.7865
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	15.2	0.7014
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	15.3	0.7479
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	19.3	0.7552
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	20.7	0.7612
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	23.4	0.6637

Compare expression of checked genes

Lus10034169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.