Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02510 339 / 3e-99 TOC86, TOC160, PPI2, ATTOC159, TOC159 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) AT2G16640 302 / 3e-87 ATTOC132, TOC132 multimeric translocon complex in the outer envelope membrane 132 (.1) AT3G16620 297 / 4e-86 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) AT5G20300 276 / 3e-80 Toc90 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) AT5G05000 95 / 5e-21 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3) AT1G02280 95 / 6e-21 PPI1, ATTOC33, TOC33 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) AT4G15810 92 / 1e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33950 49 / 1e-05 Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2) AT1G33900 44 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G33890 43 / 0.0006 Avirulence induced gene (AIG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043414 [exp] 1064 / 0 AT4G02510 387 / 2e-119 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006048 [exp] 362 / 2e-108 AT4G02510 1178 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10005063 [exp] 298 / 2e-85 AT3G16620 1204 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10027835 [exp] 270 / 1e-75 AT3G16620 645 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Lus10028706 [exp] 246 / 1e-68 AT4G02510 548 / 3e-175 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Lus10006471 [exp] 231 / 2e-64 AT5G20300 754 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10027712 [exp] 229 / 2e-63 AT5G20300 744 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10004619 [exp] 130 / 2e-33 AT5G20300 239 / 3e-73 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Lus10009860 [exp] 96 / 6e-21 AT1G02280 374 / 8e-131 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G224900 [exp] 414 / 3e-128 AT4G02510 847 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.010G014300 [exp] 397 / 7e-121 AT4G02510 812 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.008G225000 [exp] 380 / 1e-115 AT4G02510 790 / 0.0 TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 86, TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 160, PLASTID PROTEIN IMPORT 2, translocon at the outer envelope membrane of chloroplasts 159 (.1) Potri.009G131300 [exp] 320 / 9e-94 AT3G16620 1111 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.004G171600 [exp] 303 / 8e-87 AT3G16620 1128 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.009G131200 [exp] 301 / 3e-86 AT3G16620 1129 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, translocon outer complex protein 120 (.1) Potri.006G063500 [exp] 253 / 6e-72 AT5G20300 865 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.018G123300 [exp] 250 / 4e-71 AT5G20300 796 / 0.0 translocon at the outer envelope membrane of chloroplasts 90, Avirulence induced gene (AIG1) family protein (.1), Avirulence induced gene (AIG1) family protein (.2), Avirulence induced gene (AIG1) family protein (.3) Potri.014G109400 [exp] 94 / 6e-21 AT1G02280 422 / 4e-150 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2) Potri.002G183400 [exp] 92 / 4e-20 AT1G02280 417 / 6e-148 PLASTID PROTEIN IMPORT 1, translocon at the outer envelope membrane of chloroplasts 33 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF04548 [flax] [poplar] AIG1 AIG1 family CL0023 [flax] [poplar] PF11886 [flax] [poplar] TOC159_MAD Translocase of chloroplast 159/132, membrane anchor domain
Representative CDS sequence Show only first row Show all	>Lus10034170 pacid=23154689 polypeptide=Lus10034170 locus=Lus10034170.g ID=Lus10034170.BGIv1.0 annot-version=v1.0 ATGTCCACCACCACAACCACCAGTGGTGCTCCCCTTTCACCAACACCACTTCCCCTCCCCCCCTCTTCTTCTTCTCTTGTACTTCAGTCCGCTGCTTCTT TCCGTATCAGGGCTCCCGTTACTGCTGATTCCGACTCCTCCGACTTCGACTCCAATGTCTCCGACGACGACCTCTCCCCTGCTCCACTTCACACTACTAC TACCCCGGATTCTCAAAACCCCAAGGCTCTCGTTATGCCTGTTGCCCAGCTCTCACTTGACGACGACGACCATCACCATGACTTGGACTTCGACTCCGAC TTATCCGACGAGGAAAACTCCGCCCTTCCAGCTCTTGTCAAAGTCCCCACCTTGGACAACAAGAGCAATGTTGTCGTTAAATCCTTGGTCTTTGGGGATG ATACCGAAGAAGATACTGATGATGATAATCAAAGCGTTTCTTACAGGAATTTGGATGCTGCTCAACTGAATAGTAGCAGTGGTTATGATTCTGGTTCTGT TCGGTTGTTGCAAGTTGCAAATGAAGAAGACCATGTTCTTCCAGAGGGAAATTCAGCAGTAGCAGCTGAGGATGTGGTCAAACACTTTGAGGTTCAAGTT GAAAATCTTCCGGTGGAAAGTTCAGGTGAAAATAATACCGATCAGAATGAACGCCATGACGCAGTTGAAGAACAAGAAGAAGAGGAGTCCAGGTCCATTG TTCCTGCTGATGCTGATGCTGGCAGTGCCACCAGGCCTAATCTCAATGTTGAATTCCATGAAAATGGACAAATTGGAAATTCTGAAGCAGCCAATTTTGA TGGTAAAACAAAGTTTCTACTTCCTGATGCAGATTATTTACAAGACTTGACCTTTGGAGGAGGCCTTGAGGTTTGCAGTGATTCTCAGACAAACAGTGGT CAGATGATTGCCGTTGGGACAGAAATGGGACTGCAAGAAAACCATTTGTATGATTCTGCTGCAGTGGCTAGTAGTAGCCCTGCAGAATCGGAGGGCAGCA GTTTCACAATGGTTACTTCTTGTGATGAGTCTAGGCAAGCTGTTTCTCCTGACTGGTCTGCTGATACAGGTTCTTCATCATTTCGTGGCATGATCCCTCC TCCTCCTCTAGACTCAGCCAAGGTAATATTAAGTGAGGGTAACGTGAACGAGGAGTTTATAGTAAAGTTCTTGAGGCTTATCCATCGACTAGGATACTCT CCTCAACACCCTACTGCTGCTCAGGTAATGTATAGCCTGGTAGGGGAAGGGTATGGAGCTCAAGAACTTAGCTTTGACAGATTAGCCATGGAGCTTCACG AAGAAGGCAAAGCAGACGATGTAGACTTGTGTTTGAACATTTTGGTTATTGGGAAAACTGGAGTAGGAAAGAGTTCAACCATTAATTCTATATTTGGGGA GAAGAAAGTTGCTATAAATGCATTTCAACCAGCCACCACTTATGTCAAGGAGGTTTGTGGCACAGTGACTGGTATCCGAATTAGAATCCTTGATACACCA GGATTCAGACCTTCCATCAAAGAAGCATCTGCCAACAGAAAGATACTTGCTTCCTTGAAGAAGTTGACTAAGAAGTCCCCCCCAGATGTCGTCCTCTATG TTGACCGGTTGGACTATATATCAAGTGATCAAATTGATGTTGCATTGCTAAGTGAAGTCACCAAGTCGTTGACATCATCTATATGGGAAAACGCCATCGT TGTTCTAACTCATGCTTCTTCGCTTCCACCCGAGGGACCATCCGGATCGCCATTGAGTTTCGAGGAATTCGTTACTAGGAGGTGTGATGTTGTTCATCAA GCCATCAGCTTAGCAGTCGGTGACCCACTTCTTATGCATAGGAGACCGGTGGCTCTAGCTGAGAATCAGCATAACATCAGTAGATGCTTCAATTGGAATG CACAGTTGTTGCTTATGTGTTGTTCTGTAAAGATACTATCAGAAGCAAAGTCGGTAGCCAAGTTTCAGGCAGGCAGTCCTGGCCGTGCTTTCCTCCCTCT CCTTCAAAATGTCCTGTTCTGTGATGATGATGAGTATGACCAGCGCCCATCATTCGAGCCTTTGAGGAAATCACAGGTGGAGAAGCTCAGCAAGGAGCAG AAGAAACCTTATTTCGACGAGTATGACTACCGGCTGAAACTCCTTGAGAAGAAGCAATGGAGAGAAGAAGTGAAGGAGATGAACTCCAATGAGTTCAAAG CTTTGCTTGACGTTTCCTTGCCAACTTCATTTGACAGCAGCTATCCTTCTTTCAGATATAGAGCGTTAAATACGACGTCTCGAATTCTTGTGCGACCAAT TATGGATTCAAATGGATGGGATCATGATTATGGGTATGATGGACTTAGCATTTTAAGAGATCATGATTATGGTGCGTTTGCTGTTCAGGTCACCCAGGAC AAGAAACGATTCAACTTGGTTATGATTGCCAACTTACAGAGTCAAGTTTGTATTGGTAGAAGGTCCAAAATGGATATTGGTGTTTGGATGAACAACAAGA GGAGAGGGAAGATCAGCATTAAAACCAGCAGCAGCAGCTCGGACCTGCAGATTTTTGCAGTGATGGGTGTTGTACCACTTGCTATGGCTGTCTTGAGAAG CATCTTTGGAGAAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10034170 pacid=23154689 polypeptide=Lus10034170 locus=Lus10034170.g ID=Lus10034170.BGIv1.0 annot-version=v1.0 MSTTTTTSGAPLSPTPLPLPPSSSSLVLQSAASFRIRAPVTADSDSSDFDSNVSDDDLSPAPLHTTTTPDSQNPKALVMPVAQLSLDDDDHHHDLDFDSD LSDEENSALPALVKVPTLDNKSNVVVKSLVFGDDTEEDTDDDNQSVSYRNLDAAQLNSSSGYDSGSVRLLQVANEEDHVLPEGNSAVAAEDVVKHFEVQV ENLPVESSGENNTDQNERHDAVEEQEEEESRSIVPADADAGSATRPNLNVEFHENGQIGNSEAANFDGKTKFLLPDADYLQDLTFGGGLEVCSDSQTNSG QMIAVGTEMGLQENHLYDSAAVASSSPAESEGSSFTMVTSCDESRQAVSPDWSADTGSSSFRGMIPPPPLDSAKVILSEGNVNEEFIVKFLRLIHRLGYS PQHPTAAQVMYSLVGEGYGAQELSFDRLAMELHEEGKADDVDLCLNILVIGKTGVGKSSTINSIFGEKKVAINAFQPATTYVKEVCGTVTGIRIRILDTP GFRPSIKEASANRKILASLKKLTKKSPPDVVLYVDRLDYISSDQIDVALLSEVTKSLTSSIWENAIVVLTHASSLPPEGPSGSPLSFEEFVTRRCDVVHQ AISLAVGDPLLMHRRPVALAENQHNISRCFNWNAQLLLMCCSVKILSEAKSVAKFQAGSPGRAFLPLLQNVLFCDDDEYDQRPSFEPLRKSQVEKLSKEQ KKPYFDEYDYRLKLLEKKQWREEVKEMNSNEFKALLDVSLPTSFDSSYPSFRYRALNTTSRILVRPIMDSNGWDHDYGYDGLSILRDHDYGAFAVQVTQD KKRFNLVMIANLQSQVCIGRRSKMDIGVWMNNKRRGKISIKTSSSSSDLQIFAVMGVVPLAMAVLRSIFGERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16640		ATTOC132, TOC13...	multimeric translocon complex ...		Lus10034170 [exp]	0	1
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	7.5	0.8341
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	9.5	0.8500
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	10.8	0.8565
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	13.7	0.8308
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	16.5	0.8615
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	19.8	0.8489
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	20.0	0.8397
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	21.1	0.7893
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	21.4	0.8040
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	21.8	0.7714

Compare expression of checked genes

Lus10034170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.