Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49030 1524 / 0 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 256 / 6e-71 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G16715 177 / 3e-45 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 137 / 7e-33 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043413 [exp] 1882 / 0 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024041 [exp] 227 / 6e-61 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 223 / 1e-59 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10009139 [exp] 177 / 2e-45 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10028505 [exp] 155 / 3e-38 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10034788 [exp] 138 / 6e-33 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10033331 [exp] 137 / 9e-33 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10015552 [exp] 54 / 5e-07 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014500 [exp] 1604 / 0 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 237 / 2e-64 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 216 / 6e-59 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G124500 [exp] 177 / 2e-45 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G004100 [exp] 127 / 1e-29 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 124 / 1e-28 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 99 / 2e-21 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 46 / 0.0001 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06827 [flax] [poplar] zf-FPG_IleRS Zinc finger found in FPG and IleRS
Representative CDS sequence Show only first row Show all	>Lus10034171 pacid=23154721 polypeptide=Lus10034171 locus=Lus10034171.g ID=Lus10034171.BGIv1.0 annot-version=v1.0 ATGGCAGCTAAGAAAGCTTCCCAAGGAGAAAAGCAAGATGAAGGAAGATACAAGCACACGGTTGATTTACCAAAGACAGCATTTGGTATGAGAGCAAATT CTCTAGTGAGAGAACCGGAGATTCAGAAGTTATGGGATGACAGTGATGTGTTCAAAAAAGTTACTGACAAAAATAGTGGGATCCTTCAAAATTACAAAGT CCATTATGTACCTGGCTGGGACTGTCACGGCCTTCCTATAGAATTGAAAGTTCTCCAGTCATTGGATCAGGATACCCGTAAGGATCTGACACCCTTGAAG CTGAGGGCAAAGGCAGCAAAATTTGCTAGAGCAACTGTCAAAACTCAGATGGCATCATTTAAGCGTTATGGAGTGTGGGCAGACTGGGACAACCCGTATC TAACTCTGGATCCACAATATGAAGCTGCTCAGATTGAAGTATTTGGCAAGATGGCCCTGCAAGGATACATCTACAGAGGCCGGAAACCGGTTTATTGGAG TCCTTCATCACGTACTGCTCTTGCAGAGGCTGAATTGGAGTATCCTGATGGCCATATTTCGAAGAGTATATATGTTGCACTCAGAATGGTACCAAGAACT TCCAATGTCTCACTAGAGGAATTCTTTCCTGATTTGTGCTTGGCTATTTGGACAACAACTCCATGGACGATTCCAGCCAATGCCGCTGTTGCGGTTAATG ATAAACTACAATATGCGGTAGTTGAACTCCAATCGTTCTTGGAAGATTCTTCTCTTCCAACTGGAAAGCAAAAGCAAAGGCCTGGAAATGTTCTCAGGGA ACAAAAGCGTCTTTTTCTTGTAGTAGCATTTGATCTTGTGCCAACACTTGAAGCGAAATGGGGTGTGAAGCTTCTTATCAGGAAAAGAATGTTGGGCTTG GAACTAGACGGTTTCAGGTACATTCATCCAGTGGATAACAGAGAATGCCCAGTTGTGATTGGAGGGGACTACATTACTACAGAATCTGGAACTGGACTTG TGCATACAGCTCCTGGGCATGGTCAGGAAGATTATATTACCGGTACTAAATATGGATTGCCCATGCTTTCCCCTGTAGATGATGGCGGCAAGTTCACTGA AGAAGCTGGACACTTTTGTGGGCTTGATGTGCTTGGGGATGGAAATATTGCAGTAGTTAAATACCTGGATGAAAGAATGTCGATCATCATGGAGGAATCC TATCAACACAAGTATCCTTATGATTGGCGAACTAAGAAGCCTACCATATATAGGGCGACTGAACAATGGTTTGCATCAGTTGAAGGATTCCGGCAGGCTG CCATGGATGCAATAGAACATGTGAAATGGATTCCACTTCAGGCACAAAACAGAATATCTGCAATGACTTCAAGCCGCTCTGATTGGTGCATCTCAAGGCA AAGGTCATGGGGTGTGCCCATCCCAGTATTCTATCATATGGAAACAAAGGAGCCTCTTTTGAATGAAGAGACTGGTGAACATGTTAAGTCGATAATAAGC CAGAAAGGTAGTGATGCTTGGTGGTACATGAAAGTAGAGGATTTGCTCCCTGACAAATATCGTGATAAAGCATTGGAGTATGAGAAAGGCACAGATACAA TGGATGTCTGGTTTGACTCAGGTTCTTCATGGGCTGCTGTAGTGGGGAATAGGAACCTTAAGTTCCCTGCAGACTTATATCTTGAAGGTACAGATCAGCA TCGAGGATGGTTCCAAAGTTCTCTGTTAACCAGTATCGCCACAAAAGGAAAGGCCCCATACTCGAGTGTCATAACCCATGGATTTGTGTTGGATGAGAGA GGTTACAAGATGAGCAAATCTTTAGGTAATGTTGTGGACCCGCGTGCTATTATTGAAGGAGGGAAAAATTCCAAGGAAGAACCGGCATATGGCGCTGACG TTCTCCGGCTATGGGTTAGCAGTGTGGATTACACCAATGATGTTGTTGTTGGTCGTCAAGTGCTTCAACAAGTTTCTGACATGTATAGAAAGCTGCGTGG AACATTAAGATACCTTCTATCGAATCTGCATGATTGGGAGGCTGATAATGCTATTTCTTACCATGATCTTCCCATGATTGATAAACATGCACTGTTTCAG CTGGAAAACGTTGTTAAGAATGTTAAAGTTAGTTATGAGAACTATCAATTTTTCAAAATATTCCAGGCTATACAGCGATTCGTTATTGTTGACCTCTCGA ATTTCTACTTTGATGTTGCTAAAGATCGACTTTATGTTGGGGGATCAACAAGTTTTACAAGGCGAAGCTGTCAAACAGTCCTAGCTGCACATCTCCTTTC CATTGTGAAGGTTATTGCCCCAATATTGCCTCATTTGGCCGAAGATGTATGGCAGAATCTACCCTTCCAGGTCATTGACACTGATGGTTCGACGGCCAAG TTTGTTTTCGAATCAAAATGGCCTGCCGTGAATGAGAAATGGCTTTCTCTTCCCGACGAAGAAGTCGAATTCTGGGGAAAAGTTCTCGAGCTGAGGACGG AGGTAAATAAAGTTCTGGAGATTGCTCGTACTGAGAAGCTGATAGGTTCAAGTTTGGAAGCAAAGGTTTACTTGCATACTAGTGACAGCAGCCTCGCCTC AAGGTTTCAAGAGATGTGTGGAACCAGCAATGAAGCAGATGCATTACATCGCATGTTCATTACTTCCCAGGCAGAAGTAGTTTCCAGGTTGGAGGATGAG TTCGTTGGTACCATACCATACAGTGGGGAGTATGTGATTGGAGCAAGCAGTAAAGTTTGGATTGGGGTTTCGCGAGCCGCTGGGTCCAAGTGTGAGAGGT GCTGGAACTACACTCCCCAAGTTGGTTCATTCGTTGACCACCCGACCCTATGTGACCGATGTTATAATGTTGTTGGAGTACTGCCGGACCCAGTCATGGC CGCCATTTAA
AA sequence Show only first row Show all	>Lus10034171 pacid=23154721 polypeptide=Lus10034171 locus=Lus10034171.g ID=Lus10034171.BGIv1.0 annot-version=v1.0 MAAKKASQGEKQDEGRYKHTVDLPKTAFGMRANSLVREPEIQKLWDDSDVFKKVTDKNSGILQNYKVHYVPGWDCHGLPIELKVLQSLDQDTRKDLTPLK LRAKAAKFARATVKTQMASFKRYGVWADWDNPYLTLDPQYEAAQIEVFGKMALQGYIYRGRKPVYWSPSSRTALAEAELEYPDGHISKSIYVALRMVPRT SNVSLEEFFPDLCLAIWTTTPWTIPANAAVAVNDKLQYAVVELQSFLEDSSLPTGKQKQRPGNVLREQKRLFLVVAFDLVPTLEAKWGVKLLIRKRMLGL ELDGFRYIHPVDNRECPVVIGGDYITTESGTGLVHTAPGHGQEDYITGTKYGLPMLSPVDDGGKFTEEAGHFCGLDVLGDGNIAVVKYLDERMSIIMEES YQHKYPYDWRTKKPTIYRATEQWFASVEGFRQAAMDAIEHVKWIPLQAQNRISAMTSSRSDWCISRQRSWGVPIPVFYHMETKEPLLNEETGEHVKSIIS QKGSDAWWYMKVEDLLPDKYRDKALEYEKGTDTMDVWFDSGSSWAAVVGNRNLKFPADLYLEGTDQHRGWFQSSLLTSIATKGKAPYSSVITHGFVLDER GYKMSKSLGNVVDPRAIIEGGKNSKEEPAYGADVLRLWVSSVDYTNDVVVGRQVLQQVSDMYRKLRGTLRYLLSNLHDWEADNAISYHDLPMIDKHALFQ LENVVKNVKVSYENYQFFKIFQAIQRFVIVDLSNFYFDVAKDRLYVGGSTSFTRRSCQTVLAAHLLSIVKVIAPILPHLAEDVWQNLPFQVIDTDGSTAK FVFESKWPAVNEKWLSLPDEEVEFWGKVLELRTEVNKVLEIARTEKLIGSSLEAKVYLHTSDSSLASRFQEMCGTSNEADALHRMFITSQAEVVSRLEDE FVGTIPYSGEYVIGASSKVWIGVSRAAGSKCERCWNYTPQVGSFVDHPTLCDRCYNVVGVLPDPVMAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	0	1
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10012587 [exp]	2.0	0.8943
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	4.1	0.9270
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	7.7	0.8893
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	7.9	0.8980
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	9.0	0.8776
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	11.2	0.8998
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	19.6	0.8808
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	22.2	0.8930
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	22.3	0.8687
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	23.7	0.8374

Compare expression of checked genes

Lus10034171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.