Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49020 702 / 0 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G06930 699 / 0 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT4G29510 190 / 5e-55 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G20020 189 / 3e-54 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 186 / 1e-53 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT1G04870 179 / 7e-51 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G12270 149 / 1e-38 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT4G16570 57 / 2e-08 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) AT4G31120 45 / 0.0001 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043412 [exp] 900 / 0 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10010162 [exp] 189 / 8e-55 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 188 / 1e-53 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10000982 [exp] 186 / 3e-53 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 186 / 4e-53 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10043295 [exp] 166 / 6e-46 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 166 / 8e-46 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10008577 [exp] 152 / 4e-40 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008664 [exp] 130 / 8e-32 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014600 [exp] 790 / 0 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 788 / 0 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.006G149400 [exp] 182 / 9e-52 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 181 / 1e-51 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G071200 [exp] 180 / 2e-51 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.007G000300 [exp] 180 / 6e-51 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 139 / 8e-35 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.014G004000 [exp] 61 / 1e-10 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 61 / 1e-09 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Potri.018G000500 [exp] 44 / 0.0002 AT4G31120 1063 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05185 [flax] [poplar] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034172 pacid=23154793 polypeptide=Lus10034172 locus=Lus10034172.g ID=Lus10034172.BGIv1.0 annot-version=v1.0 ATGGAGGTTTCACTGGAGGACACCACCACCACCACCACGAAACAAGTACAGCAGCAGAAGTTCGCTTTGACGTCCCTGACTGACCTTGCTTCTTGCTGTT CCTCTTCTTCAGCTTCTGCGCCATCTTCCTCCTTGCCGGCAGTTGCCACGTTTGCCGCCGATGATGACGTTACCAAGCTTCGATTCCACCAAGAATCGGA GTCCAATGATGTTGTTAATGTTGATCTTGCAACTGCTCAGTTGTGGAAGCTGGGACCAACGCAGTCGGTTTGCATATTTGGTGGTTCAGATGGTGATTCC AAGAATGAGAAATATTCGAAGGGAGTCACTGTTCAATTTAGAAATGAGGAGGAAAGCAGGCTCTTTCATTGTGCATTTGAGCAATGGAAGAAAGGAACCA TTTCTGAAGGAGCATCTCATCTTGACGGAACAATGACTACTAAAAGCAAGTTTGATGACAAAATAGAATCTTCGTCTGCTAAAATGTATTTCCATTATTA TGGGCAGCTGCTACATCAGCAAAATATGATGCAGGACTATGTCAGGACAGGAACCTATTATGCTGCTGTGATGGAGAATCGTAGTGATTTTTTTGGCCGT GTGGTGGTGGATGTTGGTGCTGGTAGTGGTATCTTGTCATTATTTGCAGCTCAGGCTGGAGCGAAGCATGTCTATGCTGTTGAAGCATCTGAGATGGCAG ACTATGCCCGTAAGCTTATTGCTGGTAATCCGGCTCTGGGTGAGAGGATTACGGTAATAAAAGGTAAAGTTGAGGAAGTTGAGTTGCCAGAGAAAGCCGA TATTCTGATCTCTGAGCCGATGGGCACGTTGTTGGTGAATGAGAGAATGCTGGAGTCGTATGTTATTGCAAGAGATCGGTTCCTTGTTCCTGGTGGGAGA ATGTTCCCTGCTGTTGGCAGAATACATATGGCTCCTTTCAGTGATGAGTATTTATTTGTTGAAGTTGCCAATAAGGCCCTTTTTTGGCAGCAGCAGAACT ACTTTGGTGTTGATCTAACACCCTTGCATGGATCTGCTTTCCAGGGTTACTTTTCTCAGCCTGTTGTTGATGCTTTTGATCCAAGGTTATTAGTAGCTCC TGCAGTGTCTCATGTACTAGACTTCACTAAGATGAAGGAAGAGGATTTGTACGAAACTGATATCCCCTTGAAATTCATATCAACTGTTGGAACTAGAGTG CACGGCCTGGCTTGTTGGTTTGATGTCTTGTTTGATGGAAGTACTGTCCAGCGGTGGCTTACGACTGCTCCTGGTGCGCCTACTACGCATTGGTATCAAT TGCGTTGCGTACTGTCTCAGCCACTGTACGTGATGGCAGGACAAGAAATTAGTGGGAGGCTTCGTTTCGTTGCTTTTGCTTATCTGCTAACATCGTTGAG AAACACAGCTAAAATGTGGGGACCGGGTGCTGAACAAGGCGGGATACTTCAAACTTCGTCGTGCAAACTTGATCTCAAAGAACCATACTATAGAATGTCT CAGCCACAGGCTTATGCCACGCCTCAAGATCAACAACCTCCTCAGTTCATGCCTCCACAGGACGTTCACATTCAAGCAGATGACTTGGATGAAGCAGATT TGTTACAGCCATTGCAAAATTTGGAACACCAACTCCCATGA
AA sequence Show only first row Show all	>Lus10034172 pacid=23154793 polypeptide=Lus10034172 locus=Lus10034172.g ID=Lus10034172.BGIv1.0 annot-version=v1.0 MEVSLEDTTTTTTKQVQQQKFALTSLTDLASCCSSSSASAPSSSLPAVATFAADDDVTKLRFHQESESNDVVNVDLATAQLWKLGPTQSVCIFGGSDGDS KNEKYSKGVTVQFRNEEESRLFHCAFEQWKKGTISEGASHLDGTMTTKSKFDDKIESSSAKMYFHYYGQLLHQQNMMQDYVRTGTYYAAVMENRSDFFGR VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMADYARKLIAGNPALGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGR MFPAVGRIHMAPFSDEYLFVEVANKALFWQQQNYFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVAPAVSHVLDFTKMKEEDLYETDIPLKFISTVGTRV HGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEISGRLRFVAFAYLLTSLRNTAKMWGPGAEQGGILQTSSCKLDLKEPYYRMS QPQAYATPQDQQPPQFMPPQDVHIQADDLDEADLLQPLQNLEHQLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10034172 [exp]	0	1
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	1.4	0.9005
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	10.8	0.8918
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	12.8	0.8850
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	16.6	0.8289
AT5G38880			unknown protein		Lus10034366 [exp]	17.0	0.8278
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	17.7	0.8774
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	20.0	0.8633
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	21.5	0.8470
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	21.9	0.8686
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	23.4	0.8311

Compare expression of checked genes

Lus10034172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.