Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27260 106 / 1e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35980 76 / 3e-16 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 73 / 7e-15 hydroxyproline-rich glycoprotein family protein (.1) AT5G22870 63 / 9e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G08160 62 / 2e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 61 / 4e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 61 / 5e-11 NHL2 NDR1/HIN1-like 2 (.1) AT4G05220 58 / 5e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 56 / 3e-09 NHL3 NDR1/HIN1-like 3 (.1) AT2G35460 51 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043411 [exp] 342 / 4e-120 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005216 [exp] 212 / 1e-68 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013329 [exp] 137 / 3e-41 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 84 / 2e-19 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 82 / 8e-19 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021284 [exp] 74 / 4e-15 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10016962 [exp] 61 / 5e-11 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 59 / 2e-10 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 59 / 4e-10 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218300 [exp] 168 / 1e-51 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019800 [exp] 162 / 3e-49 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 109 / 2e-28 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G003800 [exp] 79 / 1e-17 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 76 / 2e-16 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071200 [exp] 76 / 5e-16 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G071600 [exp] 70 / 3e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 56 / 2e-09 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 55 / 6e-09 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G020000 [exp] 51 / 7e-08 AT3G52460 48 / 5e-07 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034173 pacid=23154794 polypeptide=Lus10034173 locus=Lus10034173.g ID=Lus10034173.BGIv1.0 annot-version=v1.0 ATGGAACCGGCCACCGGCTACCCTATACCTCCTAACCAACAGCGTCCCCCCAACCCCAATGGCTATCCCGCTCCTCACCCCGGCACAGCTTACCCTTACC AAGCCCCCTTGCAGCCTTCTAATCCATACTACTACAACCCTCAAAACCCTGCTCCCTATACTGTCGCGCGCCCGACTCTCTACCGCCGATTGATCCTGGT TTTCATCATCGTCACTGCAATCTTCTTCACCGCCCTCTTCATCAGCTGGATTGTCATCCGCCCTCGCGTCCCGGTATTCCACATCACCTCTTTCACTCTC TCCAGCTTTAATTCCTCCAGCCATCAGCTCTCCGGAACCTGGGCAGCTCGATTCGAGGTTTTCAATCCAAACAAGAAGATGGACATCGAGTACGACGAGA TCCAGGCCTTCGTTTTCTTCCAGAAGCAGTCCTTGACCCAGAACCGACTCCAGCCGTTCCTTCAGCAGCACAAGAATCTGACCGTGCTGGAGACGGAGTT CTCCATTATCAACACTTTTGTGGATCAGTGGGTGTCGGACGCTGTCGATGGGGAAAAGAAACGAGGCTCTGTGACTTTCGATTTGAAAGTGGTTGCTGAT ATTGGGTTTAGGGTTGGTGAACTGAGAGCCAGGCGACGTCTGCTTCGAGTCAGCTGCTATGATCTCACTGTCACCCTACCTGGGAGTGGTGGATCCGGTA ACTTTACCAAAGGTCCCAAGCAATGCCAGGTTTATACTTGA
AA sequence Show only first row Show all	>Lus10034173 pacid=23154794 polypeptide=Lus10034173 locus=Lus10034173.g ID=Lus10034173.BGIv1.0 annot-version=v1.0 MEPATGYPIPPNQQRPPNPNGYPAPHPGTAYPYQAPLQPSNPYYYNPQNPAPYTVARPTLYRRLILVFIIVTAIFFTALFISWIVIRPRVPVFHITSFTL SSFNSSSHQLSGTWAARFEVFNPNKKMDIEYDEIQAFVFFQKQSLTQNRLQPFLQQHKNLTVLETEFSIINTFVDQWVSDAVDGEKKRGSVTFDLKVVAD IGFRVGELRARRRLLRVSCYDLTVTLPGSGGSGNFTKGPKQCQVYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	2.8	0.9365
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	4.6	0.9282
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	6.2	0.9287
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	7.3	0.9270
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	8.0	0.8931
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	8.1	0.9053
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	8.7	0.8959
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	9.4	0.9072
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	9.8	0.9279
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	12.2	0.9052

Compare expression of checked genes

Lus10034173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.