Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44220 196 / 1e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11660 173 / 3e-54 NHL1 NDR1/HIN1-like 1 (.1) AT5G22200 167 / 4e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 163 / 2e-50 NHL12 NDR1/HIN1-like 12 (.1) AT3G52470 159 / 8e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 148 / 1e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G09590 148 / 2e-44 NHL22 NDR1/HIN1-like 22 (.1) AT2G35970 146 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 131 / 5e-38 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 110 / 2e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043410 [exp] 353 / 6e-125 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 177 / 2e-55 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1) Lus10021286 [exp] 174 / 1e-54 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 168 / 2e-52 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10004202 [exp] 152 / 4e-46 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10029406 [exp] 147 / 3e-44 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 129 / 2e-37 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 128 / 1e-36 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10030193 [exp] 94 / 4e-23 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019600 [exp] 187 / 4e-60 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 174 / 1e-54 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 171 / 1e-53 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.005G088000 [exp] 166 / 1e-51 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 131 / 5e-38 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 127 / 3e-36 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 111 / 2e-30 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 108 / 3e-29 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 72 / 4e-15 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 71 / 8e-15 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10034175 pacid=23154654 polypeptide=Lus10034175 locus=Lus10034175.g ID=Lus10034175.BGIv1.0 annot-version=v1.0 ATGAAAGAATGCGGCCACGATTCCGACGGCGGCGGCAGCAAGTCGTCGGCCATGAAAACCTACATCATAATGGCAGTAGCCGCCTTATCTCTCATAGGAC TCACCATCCTGATCATGTGGGCCATCCTCCATCCGACCAAACCCACCTTCCTCCTCCAAGACGCCACCCTCTACGCCTTCAACCTCACCAACTCCAACCT CTTCCTAACCGCAACCCTCCAAGTGACTCTCTCTTCCCGCAACCCCAACCGCCGCGTCGGGGTCGACTACACCCGCCTCGGCATCTACGCCTCGTACCGC AACCAGCAGATCACGCTGTCCACGCAGCTCCCTCAGGGCTACGTGGGGACCAAGGACGTCACTGTGCGGTCCCCTTTCTTGTACGGGCAGACGGTGCCTG TCTCCCCCGGACTGGTCCAGGCCGTGGGCCAGGACCTCAGCGCGGGAGTTCTGATACTGAATGTGAAAGTATACGGGAGGCTGAAGTGGAAAGTTGGGTC TTGGCTTTCGGGGAAGTACCATTTGGCGGGTAACTGCCCGGCTCACCTCAGATCTGCAACCCACTTGGCGGCTGGCGGCGGCGGCGGCAGTAGTATGTTT GATGGAGTAGGCGTGGGGATCAAGTATCAGTTTGATAATCAAGGTTGCAACGTTGAAGTCTCCACTTGA
AA sequence Show only first row Show all	>Lus10034175 pacid=23154654 polypeptide=Lus10034175 locus=Lus10034175.g ID=Lus10034175.BGIv1.0 annot-version=v1.0 MKECGHDSDGGGSKSSAMKTYIIMAVAALSLIGLTILIMWAILHPTKPTFLLQDATLYAFNLTNSNLFLTATLQVTLSSRNPNRRVGVDYTRLGIYASYR NQQITLSTQLPQGYVGTKDVTVRSPFLYGQTVPVSPGLVQAVGQDLSAGVLILNVKVYGRLKWKVGSWLSGKYHLAGNCPAHLRSATHLAAGGGGGSSMF DGVGVGIKYQFDNQGCNVEVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	0	1
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	3.2	0.9771
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	4.5	0.9771
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	5.5	0.9771
					Lus10004437 [exp]	6.3	0.9771
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	6.5	0.7975
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	7.1	0.9771
					Lus10021739 [exp]	7.7	0.9771
					Lus10039674 [exp]	8.4	0.9771
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	8.9	0.9771
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	9.5	0.9771

Compare expression of checked genes

Lus10034175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.