Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06590 1011 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043409 [exp] 1655 / 0 AT1G06590 1016 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G081200 [exp] 1210 / 0 AT1G06590 1103 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034176 pacid=23154711 polypeptide=Lus10034176 locus=Lus10034176.g ID=Lus10034176.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTGGTGTGTTTGCATTGACGCCGCACAAAGTATCAGTGTGCATTCTGCTTCAATTGTACGCCCCGCCCGCCCAAGCTGTTCCTCCGTCTC CTTTCCTTTTCTCTTCGGTGTCTCAGCACAACCGCCTGGGTTTGTACTTGTTAGCTCTCACCAAGGCTCATGATGCTTTTTTGGAGCCAAAACTAGGAGA TCTTCTGACCCAATTGAAACAAATCAGCGGTTCATTGGGTGATTGGTTGATTGAGCATTTATCGAATAGGTTCTCCTCTCTATCTTCACCTGATGATTTG GCTAATCTATTCAGCGAAATTAGAGGGATACTCGGGGGAACAGAATCGGCTGTGGTTGAGGATAATCAGGTTGTTTTGGACCCAAACAGTACTCTGGGAA TGTTTATCCGTCGTTGTGTACTCGCTTTTAACACCTTACCATTTGAGGGTGTGTGCCACCTGTTGACAGACGTAGGAAATTACTGCAAAGAATCGCTATC AAGTTGTCTCTCATATGAGGGGCATGGTTTAGATGATTCTGGTAATGATTTGGACACAGTATCAGCATACGAGAACATGGACCTGGAAAATATTGTGTTT CAGAAAGTTACAGAAGAAATTCAAGCAACCAAGCAGGCCAGTGAGCGAATCTCTTTTCACTTACATATACTCAAAGCACTTTCTCGACTGGTTGAAGACG TGGAGATTGTTGGCGGTTCTCTATATAAAGGTGGTGGTGAAACTTGCTCCAGTTTTCATACCTATGCCAGTGGATCAAGAGTTACTGGAACTTCTGGTGA CATATTCCTGAGATCCACTGGTCAACTTCATGGCTTCTTCATGGAACAAGCAGATGAAATTGAGAAGCTTGGTAGTTCATTCCCTTTAAATGGCTTTGAA CTTATCTTAAACCGGATTAAAATAATGGCACCTGAGTTACATCGTGTACACTTCTTACATTACTTGAATTTCCTTTATCACGATGACTATTTTGGTGCTC TGGAGAACCTCCGACGCTTTTTCGATTATAGTGTAGGAACCGATGGATATGATACTGTTCCTGCACCATCACGAGTCAAAGGGTTTGAGAGATATGAGAT AGGACTGTTGTGTTTGGGAATGCTGCAATTTCACTTTGGCCATCCTCGACAAGCGTTGGAGCAATGCAATGATAGCTGTCTTGCATATACTTTGGCCGCA ATCTGCACCTTGTCTTCGGAAATGGGTAGCTCAAATAGGAGTGGGGTGCTTGGAACATCATATTCACTTACAGCCAGCATAGGCACATCATTGTATTTCA AGCAACAATTGTTTATTCTCTTGAAAGAGTCTCTTAAAAGAGCAGAAAGTTTAAGGCTGAAAAGGCTGGTTGCCTCTAACCATCTGGCTATGGCTAAATT TGACTTAATGAATGTGCAAAGACCCCTGCTATCATTTGGTCCCAAAGCATCCATGAAGCTACGAACGTGTCCAGTCACTGTTTGTAAGAAATCAAGATTG TGTTTGCATTTAGTTAGTGATTATGCCTCTGAAAGCTCCACGATGACAAATGATGGTGCTTTTAGCACAGCCTGGCTTAACAATTTAAGAAAACCGTTGG GTGCATCGGTGTTATCCTTAGACAGTGGATTTGGGAACAGTTCCAATGCTTTTCAATTCTGTGCACAGCCAAGTTCAATACCCACATCTGTTTTGCAATT ACTAGGTTCTTCATACTTGTTTCGCGCTACAGCTTGGGAAATATATGGAAGTGCTACCCTTGCTCGAATGAACTCTTTGGTCTTTGCAACTTGTTATCTT GATTCTTCAAGCTCATCAGATGCAGCATTGGTACATGCAAAGCTCATCCAGCACTTGGCAACATTTCAAGGATATAAAGATGCTTTCTCTGTCCTCAAAC AAGCAGAGGAGAAGTTTTTGTCAATCTCAAGACCAGTAATTTTGTTACTTAAATTACAGCTGCTCCATGAGCGCGCTTTGCATAGAGGAAATCTAAAGCT AGCACTACAGCTCTGTAATGAGCTGGGAGTTTTAGCATCACCATTCAAAGGTGTTGATATTCAGCTGAAGTTTGAAGCAAGCATGCACCATGCTCGTACA TTGCTTGCAGCCAAACAGTACAGACAGGCATCTGCAGTTGGTCATTCACTCTTCTGCCTATGCTATCAATTCAACATGCAGGTTGAGAATGCTAGTGTTC TTCTTATGCTTGCTGAAATTCACAAGAAAGCTGGGAATGCTGTTTTAGGCCTTCCATATGCGCTGGCAAGCCTCTCATTTTGTCAGTCATTCAACTTGGA TCTTTTGAAAGCGTCAGCCACTGTCACACTGGCAGAACTGTGGCTCTCACTGGGAAAAAGTCATGCAAAAAGAGCTTTAACTCTGCTACATGGTGCTTTG CCAATGGTTCTCGGTCATGGTGGTCTCGAGCTTCGTGCTAGAGCTCGTCTTATTGAAGCTCAATGCTATTTATGTGACCCAAACTATTCAGTGGTGGAGG ACTGGGAAATCGTGGTGGATGCTCTGGGGCAGGCTTCTGAAGAGTTTGAAGTCCTAGAGTACCACGAAATGGCAGCAGAGGCTTACTACTTGTTGGCCAT GGTTTACGACAAACTGGGAGAGTTGGAGAAAAGGGAGGCAGCTGCAGATTCATTCAAGAAACACATCTTGGCTCTTGAGAATCCTGAGGAAGGAGATGAT GATGATGGTGATGATGATGATAGCTTATCTGGTTTGTTGTAG
AA sequence Show only first row Show all	>Lus10034176 pacid=23154711 polypeptide=Lus10034176 locus=Lus10034176.g ID=Lus10034176.BGIv1.0 annot-version=v1.0 MAAAGVFALTPHKVSVCILLQLYAPPAQAVPPSPFLFSSVSQHNRLGLYLLALTKAHDAFLEPKLGDLLTQLKQISGSLGDWLIEHLSNRFSSLSSPDDL ANLFSEIRGILGGTESAVVEDNQVVLDPNSTLGMFIRRCVLAFNTLPFEGVCHLLTDVGNYCKESLSSCLSYEGHGLDDSGNDLDTVSAYENMDLENIVF QKVTEEIQATKQASERISFHLHILKALSRLVEDVEIVGGSLYKGGGETCSSFHTYASGSRVTGTSGDIFLRSTGQLHGFFMEQADEIEKLGSSFPLNGFE LILNRIKIMAPELHRVHFLHYLNFLYHDDYFGALENLRRFFDYSVGTDGYDTVPAPSRVKGFERYEIGLLCLGMLQFHFGHPRQALEQCNDSCLAYTLAA ICTLSSEMGSSNRSGVLGTSYSLTASIGTSLYFKQQLFILLKESLKRAESLRLKRLVASNHLAMAKFDLMNVQRPLLSFGPKASMKLRTCPVTVCKKSRL CLHLVSDYASESSTMTNDGAFSTAWLNNLRKPLGASVLSLDSGFGNSSNAFQFCAQPSSIPTSVLQLLGSSYLFRATAWEIYGSATLARMNSLVFATCYL DSSSSSDAALVHAKLIQHLATFQGYKDAFSVLKQAEEKFLSISRPVILLLKLQLLHERALHRGNLKLALQLCNELGVLASPFKGVDIQLKFEASMHHART LLAAKQYRQASAVGHSLFCLCYQFNMQVENASVLLMLAEIHKKAGNAVLGLPYALASLSFCQSFNLDLLKASATVTLAELWLSLGKSHAKRALTLLHGAL PMVLGHGGLELRARARLIEAQCYLCDPNYSVVEDWEIVVDALGQASEEFEVLEYHEMAAEAYYLLAMVYDKLGELEKREAAADSFKKHILALENPEEGDD DDGDDDDSLSGLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06590			unknown protein		Lus10034176 [exp]	0	1
AT1G77620			P-loop containing nucleoside t...		Lus10035108 [exp]	1.4	0.9194
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	1.7	0.8975
AT1G49980			DNA/RNA polymerases superfamil...		Lus10020986 [exp]	3.0	0.8804
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	12.0	0.8694
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	12.4	0.8985
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	14.1	0.8270
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	17.0	0.8964
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	23.4	0.8410
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	24.1	0.8799
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	30.4	0.8768

Compare expression of checked genes

Lus10034176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.