Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 952 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT3G17650 880 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 870 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT3G27020 667 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G53550 661 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 644 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 640 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT4G24120 625 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G45450 293 / 6e-95 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043408 [exp] 1241 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10013323 [exp] 1080 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10010205 [exp] 709 / 0 AT1G65730 873 / 0.0 YELLOW STRIPE like 7 (.1) Lus10017406 [exp] 708 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10035194 [exp] 656 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10012549 [exp] 656 / 0 AT3G27020 1154 / 0.0 YELLOW STRIPE like 6 (.1) Lus10023240 [exp] 655 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 654 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 650 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G069200 [exp] 909 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 897 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 896 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G151800 [exp] 896 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 884 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.005G093800 [exp] 737 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 666 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.011G055224 [exp] 637 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 622 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G084400 [exp] 582 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10034177 pacid=23154704 polypeptide=Lus10034177 locus=Lus10034177.g ID=Lus10034177.BGIv1.0 annot-version=v1.0 ATGGCAATCGACAGGAACTTCGACGATGACGACGGCGGCGGAGGCCGTGAAGAAAACCGCTACTACGCAGACGAGGTGGAGGACAAAACGAGGTCCCGGA AGAAGAAGGTTTCGGGATATACCATAACTACTTTCTCGGAAACGGAGCTTGATTCCGTGGAGAAGATCTTCGAGGCTAAAGAGGTGCCTCCGTGGCAGAA GCAGCTCACACTCAGGGCTTTCGTCGTCAGTTTCATTTTGGGGGTTCTATTCACTTTCATTGTCATGAAGCTCAACCTCACCACCGGAATAATCCCCTCG CTCAATGTCTCCGCCGGATTGCTCGGCTTCTTCTTCGTCAAGACCTGGTCCAAGCTGCTCCAGAAGTCTAGACTGCTCAAGCAACCTTTCACCCGCCAGG AGAACACCGTCATTCAGACTTGCGTTGTAGCAACTTCCGGCATCGCCTTTAGCGGTGGTTTTGGGAGTTACCTGTTTGGGATGAGTGAGGTTGTTGCAAG TCAATCCAAAGAAGCCAACTCTGCCAAGAATATCAAAGATCCATCACTGGGATGGATGATTGCTTTCCTTTTTGTCGTCAGCTTTCTTGGCTTATTCTCT GTTGTTCCTCTTCGAAAGATTATGATTGTGGACTTCAAATTGACGTATCCAAGTGGCACAGCAACTGCTCACCTTATCAATAGTTTCCACACTCCTCAGG GCGCCAAGCTAGCGAAGAAGCAAGTAAGAGCATTGGGGAAGTTTTTCTCCTTCAGCTTCTTGTGGGGTTTTTTCCAATGGTTCTTTACTGGAGGAGATGG CTGTGGATTTGTGAATTTTCCTACTTTTGGTCTTGAGGCCTATGATCACAAGTTCTTCTTCGATTTCTCTGCTACTTACGTTGGTGTTGGAATGATTTGT CCGTATCTGGTAAATGTATCTTTGCTACTAGGAGCAATCTTATCATGGGGCATCATGTGGCCTCTGATAAACAATCAAAGAGGTAACTGGTACGCTGCCG ACCTCCCTCAGAGCAGTCTCTCTGGCCTCCAAGGTTATAAGATCTTCATTGCTATAGCCATGATCCTTGGTGATGGCGTCTACAATTTTGTCAAGGTCTT TGGTCGAACTGTACATGGTTTGTACCAACAGTTTTCACATAAAGAACCGGCCTCCGATCTGCCAGTTGCTGGTAACTTGGCCTCCCCTACCAGTCCTCCA GAAAAGTCATATGATGAACTGAGACGTAATGAACTATTCTTGAAGGACCAGATACCAGTGTGGATTGCTATTGCTGGCTACGTCATAATTGCAGTTGCAT CGGCAATTATTGTTCCTCACATTTTTAATCAGCTGGAGTGGTATCACATTGTAGTAATCTACATAATTGCTCCAGTACTAGCATTCTGCAATGCTTATGG TTGTGGACTAACAGATTGGTCCTTAGCATCTACGTACGGGAAACTGGCCATCTTCACAATCGGGGCATGGGCTGGGGCCTCACACGGTGGAGTTCTTGCA GGGTTGGCAGCATGTGGTGTGATGATGAACATTGTGTCAACAGCATCTGACCTTATGCAGGATTTCAAGACGGGTTACATGACATTGGCTTCACCGAGAT CAATGTTTGTGAGCCAAGTAATCGGAACAGCAATGGGGTGTGTAATAGCACCTTGCGTATTTTGGCTCTTCTACAAGGCCTTCGACGACCTAGGGCAGCC TGGGTCGCAATATCCGGCACCGTACGCTCTTGTATACCGGAACATGTCGGTGTTGGGGGTCGAGGGGTTTGCTGCTCTGCCGAAGAACTGTCTGATGCTG TGCTGTATATTCTTCTTTGCGGCTATGCTCATCAACGGAGTGAGAGACGTAGTGGGACAGAAATGGGCGAGGTTCATACCGCTACCGATGGCAATGGCGA TACCCTTCTATCTTGGAGGGTACTTTGCGATAGACATGTGCGTGGGGAGCTTGATACTGTTTGTATGGGGGAAGATAAACAAGGAGAAGGCAGATGCGTT TGGACCAGCAGTGGCGTCAGGGTTGATATGTGGGGATGGGATATGGACATTGCCGAGCTCAATATTAGCGTTAGCTGGGGTTCATCCTCCGATATGCATG AAGTTCCTCTCAAGGAAACTCAACACAAAGGTCGAGTCTTTCATAAGTTCATAG
AA sequence Show only first row Show all	>Lus10034177 pacid=23154704 polypeptide=Lus10034177 locus=Lus10034177.g ID=Lus10034177.BGIv1.0 annot-version=v1.0 MAIDRNFDDDDGGGGREENRYYADEVEDKTRSRKKKVSGYTITTFSETELDSVEKIFEAKEVPPWQKQLTLRAFVVSFILGVLFTFIVMKLNLTTGIIPS LNVSAGLLGFFFVKTWSKLLQKSRLLKQPFTRQENTVIQTCVVATSGIAFSGGFGSYLFGMSEVVASQSKEANSAKNIKDPSLGWMIAFLFVVSFLGLFS VVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTGGDGCGFVNFPTFGLEAYDHKFFFDFSATYVGVGMIC PYLVNVSLLLGAILSWGIMWPLINNQRGNWYAADLPQSSLSGLQGYKIFIAIAMILGDGVYNFVKVFGRTVHGLYQQFSHKEPASDLPVAGNLASPTSPP EKSYDELRRNELFLKDQIPVWIAIAGYVIIAVASAIIVPHIFNQLEWYHIVVIYIIAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLA GLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFDDLGQPGSQYPAPYALVYRNMSVLGVEGFAALPKNCLML CCIFFFAAMLINGVRDVVGQKWARFIPLPMAMAIPFYLGGYFAIDMCVGSLILFVWGKINKEKADAFGPAVASGLICGDGIWTLPSSILALAGVHPPICM KFLSRKLNTKVESFISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10034177 [exp]	0	1
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	6.2	0.8077
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	12.0	0.8328
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	12.5	0.7908
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	16.1	0.8016
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	17.3	0.8148
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	17.3	0.7547
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	36.6	0.7837
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10027361 [exp]	55.4	0.7255
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Lus10021946 [exp]	60.0	0.7710
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	61.5	0.7385

Compare expression of checked genes

Lus10034177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.