Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09800 272 / 2e-95 RPS18C S18 ribosomal protein (.1) AT1G34030 272 / 2e-95 Ribosomal protein S13/S18 family (.1) AT1G22780 272 / 2e-95 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042603 [exp] 281 / 8e-99 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1) Lus10006914 [exp] 281 / 8e-99 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1) Lus10014676 [exp] 280 / 2e-98 AT1G34030 303 / 1e-107 Ribosomal protein S13/S18 family (.1) Lus10022057 [exp] 280 / 2e-98 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1) Lus10043405 [exp] 222 / 5e-76 AT1G34030 245 / 3e-85 Ribosomal protein S13/S18 family (.1) Lus10018192 [exp] 38 / 0.0008 AT5G14320 222 / 3e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10025642 [exp] 38 / 0.001 AT5G14320 222 / 4e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211200 [exp] 279 / 2e-98 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1) Potri.002G051300 [exp] 278 / 8e-98 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1) Potri.005G196600 [exp] 272 / 2e-94 AT4G09800 278 / 2e-96 S18 ribosomal protein (.1) Potri.002G064632 [exp] 136 / 9e-43 AT4G09800 151 / 7e-49 S18 ribosomal protein (.1) Potri.002G088400 [exp] 48 / 3e-07 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1) Potri.005G172600 [exp] 39 / 0.0003 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10034179 pacid=23154782 polypeptide=Lus10034179 locus=Lus10034179.g ID=Lus10034179.BGIv1.0 annot-version=v1.0 ATGTCGCTAGTTGCCAATGAAGAGTTCCAGCACATTCTTCGTGTGCTCAACACCAACGTCGATGGAAAGCAGAAGATAATGTTTGCCCTTACCTCCATCA AGGGTATTGGTCGCCGATTTGCCAACATAGTCTGCAAGAAGGCCGACGTCGACATGAACAAGAGGGCTGGAGAGTTGTCATCCGAAGAGCTCGACAAGCT AATGACAGTGGTTGCTAACCCTCGTCAGTTCAAGATCCCAGACTGGTTCCTGAATAGGCAGAAGGATTACAAGGATGGAAAGTATTCCCAAGTGGTCTCT AATGCATTGGACATGAAGCTGAGGGACGATCTCGAGAGGCTCAAGAAGATCAGAAACCATCGCGGTCTGCGTCACTACTGGGGTTTGACAGTCCGAGGAC AGCACACCAAGACCACTGGCCGTAGAGGGAAGACTGTTGGTGTGTCCAAGAAGCGATAA
AA sequence Show only first row Show all	>Lus10034179 pacid=23154782 polypeptide=Lus10034179 locus=Lus10034179.g ID=Lus10034179.BGIv1.0 annot-version=v1.0 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSSEELDKLMTVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS NALDMKLRDDLERLKKIRNHRGLRHYWGLTVRGQHTKTTGRRGKTVGVSKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	0	1
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	3.2	0.8988
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	3.3	0.9283
AT2G44860			Ribosomal protein L24e family ...		Lus10009403 [exp]	7.3	0.8789
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10026664 [exp]	10.8	0.9053
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	11.0	0.8588
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10029583 [exp]	11.6	0.8997
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	12.2	0.8496
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	12.2	0.9027
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	12.9	0.9075
AT5G52370			unknown protein		Lus10016449 [exp]	13.2	0.9037

Compare expression of checked genes

Lus10034179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.