Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22250 410 / 4e-146 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44260 407 / 9e-145 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 298 / 7e-102 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 290 / 1e-98 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 283 / 8e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 268 / 1e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G06450 157 / 1e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 141 / 2e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 129 / 3e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44240 121 / 4e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021304 [exp] 346 / 3e-120 AT5G22250 335 / 8e-116 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016980 [exp] 342 / 8e-118 AT5G22250 332 / 8e-114 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10004212 [exp] 337 / 5e-117 AT3G44260 336 / 1e-116 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017123 [exp] 293 / 1e-99 AT2G32070 447 / 1e-160 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018330 [exp] 292 / 2e-99 AT2G32070 444 / 3e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10003635 [exp] 289 / 3e-98 AT2G32070 435 / 6e-156 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10036291 [exp] 286 / 5e-97 AT2G32070 432 / 9e-155 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029417 [exp] 169 / 6e-53 AT5G22250 164 / 2e-51 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 151 / 1e-43 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G200400 [exp] 454 / 2e-163 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 444 / 1e-159 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 353 / 3e-123 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 342 / 1e-118 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 295 / 2e-100 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 293 / 6e-100 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 293 / 1e-99 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 293 / 1e-99 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 280 / 1e-94 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G186300 [exp] 275 / 2e-92 AT5G22250 261 / 9e-87 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10034180 pacid=23154830 polypeptide=Lus10034180 locus=Lus10034180.g ID=Lus10034180.BGIv1.0 annot-version=v1.0 ATGACCAAACTTTCAACCTCCCCTCCGATTGCCATCAGACAAGTCTGGGCTTCCAACTTGGAATCCGAATTCCACCTCATCCGCGATGCCATCGACCATT TCCCTTTCATCTCCATGGACACCGAGTTCCCCGGCGTCGTTTTCCGCCACCCTCACCCCTCTCGCCAACTACACCGAAACCCGCCGTCTTCCGACCACTA CAAGATCTTGAAATCGAACGTCGACGCCCTCAATCTCATCCAGGTCGGCCTCACTCTCTCCGATTCCCAAGGCAACCTCCCCGATCTTGGCGGCGCTTCC ACCCAGCGCTTCATCTGGGAGTTCAATTTCAAGGACTTCGATGTCGAGCGTGACGCCCACGCTCCCGACTCCATCGACCTCCTCCGCCGTCAGGGGATCG ACTTCGCTAAGAACAAGGAGGAAGGGGTTGACTCCCGCAGGTTCGCCGAGCTGATGATGTCGTCGGGACTTGTATGCAACGACGCCGTCAGCTGGGTGAC GTTCCACAGCGCGTACGACTTCGGGTACTTGCTTAAGATCCTGACCCGGAAGTCGCTGCCCGGCGGGTTGGGCGAGTTTCTCGGTTTGATGCGGGTTTTC TTCGGGAACCGGGTGTACGATGTGAAGCATATGATGCGGTTCTGTGATAGCCTGTACGGTGGGTTGGACCGGGTGGCCCGGACGCTGGAGGTGGATCGGG TTGTGGGTAAGTGTCACCAGGCCGGGTCAGACAGCTTGCTGACGTGGCACGCGTTTCAGAAGATGAGGGATGTCTTCTTCCTTAAGGATGGGCCCGAGAA GCATGCCGGGATTCTGTACGGATTGGAAGTCTTTTAA
AA sequence Show only first row Show all	>Lus10034180 pacid=23154830 polypeptide=Lus10034180 locus=Lus10034180.g ID=Lus10034180.BGIv1.0 annot-version=v1.0 MTKLSTSPPIAIRQVWASNLESEFHLIRDAIDHFPFISMDTEFPGVVFRHPHPSRQLHRNPPSSDHYKILKSNVDALNLIQVGLTLSDSQGNLPDLGGAS TQRFIWEFNFKDFDVERDAHAPDSIDLLRRQGIDFAKNKEEGVDSRRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLLKILTRKSLPGGLGEFLGLMRVF FGNRVYDVKHMMRFCDSLYGGLDRVARTLEVDRVVGKCHQAGSDSLLTWHAFQKMRDVFFLKDGPEKHAGILYGLEVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	1.4	0.9715
AT3G03280			unknown protein		Lus10007960 [exp]	1.4	0.9681
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	2.2	0.9605
AT5G38700			unknown protein		Lus10001456 [exp]	2.8	0.9611
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	3.5	0.9631
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	3.5	0.9489
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	3.7	0.9569
AT4G29780			unknown protein		Lus10027622 [exp]	4.2	0.9582
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	5.7	0.9499
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	5.8	0.9404

Compare expression of checked genes

Lus10034180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.