Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11600 69 / 2e-16 unknown protein AT5G06270 64 / 6e-14 unknown protein AT5G22270 51 / 2e-09 BIN4 ? unknown protein AT3G52561 42 / 5e-06 unknown protein AT1G28070 39 / 0.0003 AtCFL2 unknown protein AT1G16500 39 / 0.0003 unknown protein AT1G79160 38 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043404 [exp] 102 / 4e-29 AT3G11600 78 / 1e-19 unknown protein Lus10016982 [exp] 64 / 7e-14 AT5G06270 122 / 4e-37 unknown protein Lus10021305 [exp] 63 / 1e-13 AT5G06270 122 / 8e-37 unknown protein Lus10004209 [exp] 59 / 2e-12 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 59 / 2e-12 AT5G06270 100 / 4e-28 unknown protein Lus10001804 [exp] 43 / 1e-05 AT2G33510 145 / 8e-44 unknown protein Lus10002577 [exp] 42 / 1e-05 AT2G33510 99 / 1e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161400 [exp] 66 / 3e-15 AT5G06270 91 / 9e-25 unknown protein Potri.004G200300 [exp] 66 / 7e-15 AT5G06270 71 / 7e-17 unknown protein Potri.006G206000 [exp] 64 / 4e-14 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 64 / 4e-14 AT5G06270 115 / 2e-34 unknown protein Potri.010G241400 [exp] 53 / 9e-10 AT3G11600 56 / 7e-11 unknown protein Potri.005G096800 [exp] 43 / 1e-05 AT1G79160 209 / 7e-68 unknown protein Potri.007G067300 [exp] 42 / 3e-05 AT1G79160 164 / 3e-50 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034181 pacid=23154809 polypeptide=Lus10034181 locus=Lus10034181.g ID=Lus10034181.BGIv1.0 annot-version=v1.0 ATGGGGCGGCGTACTGATCATCATCCGCAGTTGGATTTGCGGCTAAACCTGTCGCCCCCTCCTCCTGACAATCATTACCACTACGGTGATCATGATGATG GTCATCAGATGGAGGCGGAGTCGTCGTCGTCGTCGTCTCCGGTGAGGTCCACATGCTCTTCCTCATGCGACCAGAATTCCTCGACGGAGGAGGTGACGCC GCCGGCGATGGTGGTGGTGGGTTGTCCGAGGTGCCTAATGTACGTGATGTTGTCGGAGGTGGATCCAAAGTGCCCGAAATGCAAGAGTTCGGCGTTGCTT CACGATTTCATTAACCATGATCAACACCAACCCTCCTCCTCCACAATCTTCCCCAACTAG
AA sequence Show only first row Show all	>Lus10034181 pacid=23154809 polypeptide=Lus10034181 locus=Lus10034181.g ID=Lus10034181.BGIv1.0 annot-version=v1.0 MGRRTDHHPQLDLRLNLSPPPPDNHYHYGDHDDGHQMEAESSSSSSPVRSTCSSSCDQNSSTEEVTPPAMVVVGCPRCLMYVMLSEVDPKCPKCKSSALL HDFINHDQHQPSSSTIFPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11600			unknown protein		Lus10034181 [exp]	0	1
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	1.0	0.8800
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	5.8	0.8710
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	15.7	0.8456
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	17.5	0.8591
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	30.6	0.8305
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	35.1	0.8305
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	38.9	0.8139
AT2G36895			unknown protein		Lus10023001 [exp]	40.5	0.8170
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10009359 [exp]	44.4	0.8134
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012160 [exp]	44.6	0.8139

Compare expression of checked genes

Lus10034181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.