Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41350 385 / 7e-133 AtAUG1, EMB2819 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein AT2G21980 48 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043401 [exp] 578 / 0 AT2G41350 404 / 7e-143 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046200 [exp] 426 / 6e-149 AT2G41350 483 / 5e-174 EMBRYO DEFECTIVE 2819, augmin 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034184 pacid=23154656 polypeptide=Lus10034184 locus=Lus10034184.g ID=Lus10034184.BGIv1.0 annot-version=v1.0 ATGCCAGATGATTTTGCCTTTGCATTTTGGAGAGTTGATGTCCTTATGGTGGGGGGTTACTTGAAGGCATTGAACGGCCGTCTGCGGACGGAAAAACTGC CATCCGTCCGTCCACAGACGGAAGCAAATCGGACGAATGGAGAGGTTTATGTTCTCCGCCACTGTCCAGACAAGCCGATTTCCGGTGGACGGAAACTCCC TTCATCTGGCAATTATATAATTCACTCCATTGGGCGTCGAAAAATTCGAATTCAAGAGATTGGTTTAGAAATTCAGTTATCGGCCAGCAAGATCCTTCCT GTCTTCGTCTCTCTCTCCATTGCTCGATCCATCTCTCTTTTTTTCATCTTCTGTTGCTACAGTGCGACGGGGCGACCGGTTTCAGTTAATTCCCCTGCTG ATTCCCAAAGCTTGGATACAGAGATGAGCGACGTGATTTCCCTGAGCGATTCTCCAGGGTCCGAGTCCAAGAGCAGCATTGACGCATCTAGGATTGGGGA AGTTAAGGCTTGGCTCACATCTCAGTTTGACTCAATCGGCAAAGATGTCCCCGAGTTTGAATACACTCCTCGCACCATTGCTCATTTCCACGATCTAGCC ACTGTATCTCAGGCTAACACCAAGGCTGCAAATATAGTCGCCGCTGATTTCCGCCAGAAGGCCGCCGAGTACCGTGCTCAAGCTGCAAGGATTAGAGAGA TAGTAGAGTATGCGGGACTTGCACAAGAGAGTTTGCCTTCAAATGTGGTAGCTTCTGCTCAAGTTCTTGCAAATGTAGCAAATTTGTTGAATATTAGAGA CACCGAACTCAGCAGTTTTCTTGTGGCAGCTGCGGACATTTCCTTGAGAAAGACCAGTGTAGAAGAAAAGAGGGCTAAAGCACGTAATGATTCCAAAGTT CTGCTGGAGTACACTCGGAAGGCAATAGCAAGGCTTACCTATTTGAAAAGAACACTTGCACAGCTTGAGGATGATGTAGCCCCTTGTGAAGCTCAAATGG ACAACTGGAAGAACAATTTGGCAGTTATGGCGTCAAAAGAGCGACAATATTTTCAACAGCTTTCCAACTGCAAGGCTCGGCTGAACCGTGTGAGCTATAC ACCAGAGATAAACCATAGCGTGCTGGTTGAACTAGGAGAACACAAAAAGCATCTGGAAAGGGAAACCAAACCCATCTTGACCACATTGAAGAGTTACCAG GACTTGCCCGCGGTACTCATCTCTCTTCAAGTATTGGATAAAGCTTTGGCAGCATTGGCAATCGAGGAAAAGAAAAGAACGTATGCTACCCTTGAGAAGC ATCTAGGAGACTTGCTGCAGGACCTGGCCATGCAATCATGA
AA sequence Show only first row Show all	>Lus10034184 pacid=23154656 polypeptide=Lus10034184 locus=Lus10034184.g ID=Lus10034184.BGIv1.0 annot-version=v1.0 MPDDFAFAFWRVDVLMVGGYLKALNGRLRTEKLPSVRPQTEANRTNGEVYVLRHCPDKPISGGRKLPSSGNYIIHSIGRRKIRIQEIGLEIQLSASKILP VFVSLSIARSISLFFIFCCYSATGRPVSVNSPADSQSLDTEMSDVISLSDSPGSESKSSIDASRIGEVKAWLTSQFDSIGKDVPEFEYTPRTIAHFHDLA TVSQANTKAANIVAADFRQKAAEYRAQAARIREIVEYAGLAQESLPSNVVASAQVLANVANLLNIRDTELSSFLVAAADISLRKTSVEEKRAKARNDSKV LLEYTRKAIARLTYLKRTLAQLEDDVAPCEAQMDNWKNNLAVMASKERQYFQQLSNCKARLNRVSYTPEINHSVLVELGEHKKHLERETKPILTTLKSYQ DLPAVLISLQVLDKALAALAIEEKKRTYATLEKHLGDLLQDLAMQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	0	1
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	2.4	0.8482
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	3.7	0.8205
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	3.7	0.8518
AT2G15730			P-loop containing nucleoside t...		Lus10012072 [exp]	4.5	0.8362
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	4.7	0.8572
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	6.6	0.8400
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	8.2	0.8109
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	10.6	0.7534
AT5G56890			Protein kinase superfamily pro...		Lus10011933 [exp]	12.0	0.8150
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	12.6	0.8176

Compare expression of checked genes

Lus10034184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.