Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22340 317 / 6e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043400 [exp] 522 / 0 AT5G22340 353 / 4e-122 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160500 [exp] 356 / 2e-122 AT5G22340 349 / 2e-120 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034185 pacid=23154860 polypeptide=Lus10034185 locus=Lus10034185.g ID=Lus10034185.BGIv1.0 annot-version=v1.0 ATGGACGCTCTCGCCGTCTCAGGCATTGCCTGTTTCTGCAGCAGCTACCCAAAATCTCTTCTTCCCAATTCTTTATATCCACTTCCTTATCCATCGAAGC CGCTTCTCAAGGCCAACCCACGAGCTGCTTCACTTTCAAAAGCGAGTTATAACCCAGTCAGTGAACTTGCGGATGAAGATGTTCTGCAGATGTTTCTTGA GGAAAGAGCAGAAAGCGGAGACTTCGTGTCTAAAATTTGTGACATGTTCTGGCAGGGAGATCTCATAAAACTTGTTGATGCTGATATCAGTAAACCCGCC GGATCTCCTGCCCAGGAAGTGGAGCAGGTTACTGAAGAAGATCAGGAAGATGGTTTCTTGAAACTTGCCAGAACCCAACAATGGGTATTAGGAGCTAGTG ATGCCCCAAAGAACAAAAAAGCCATTGCTAAGGCCCTCCAGGATGACAGAGAAAGAAGAAAGAAACTGAGCTTTCTGAAATACGAAGCTGAGTTCTTTGT CCCTAGACCTTTCTGTTCCTGCAGTTTTAATCAGAATATGTATATGTACTTTAACACTTACACTACAGTTATGCGTTTCCTGTCCGCTTTGAGATGTTGC TTCTGCCATCGTTTCAGAAGTGTGACTCTATGTATTTCATTGCAGCTCAAAAGGGAATTGATGTTTCTATCAATTGGTATTGGCACAGCAGGTTGCGGAT ACTGTTTGGTAGCTTTATCCCTTCAGGCTGCTATAAGTTATGCAGTTGGAGTGCTTTTCAGTTGCCTATACCTTCAGCTCTTGTATCGACATTCAGACAA CCTGTCGAGGAAAATGGTTCCTTCAATTTTCACTCAGAAGAAGGCCAAGAAAATTGGGATAAGAAGTGAGGATCTTAGAGATTCATTCGAGAAAACAATA AAGGGAAGCGGTATTGCCCTTTCGTCTCCTCGGCTTGTGATACCGGCAACTGTTTACGGGCTATGGGCGCTATGCCATCACTATATCGGCAATGAGTTTT TTGATTTCCAGATTGTACCAGCGATGTTCGGAATGTTTGTATACAAAGCTGCAGCTCTGGTCCAAGTGTACAGAGATAATGAGGACCTTGAGCTCGTCTT CCCGGAGATGTAG
AA sequence Show only first row Show all	>Lus10034185 pacid=23154860 polypeptide=Lus10034185 locus=Lus10034185.g ID=Lus10034185.BGIv1.0 annot-version=v1.0 MDALAVSGIACFCSSYPKSLLPNSLYPLPYPSKPLLKANPRAASLSKASYNPVSELADEDVLQMFLEERAESGDFVSKICDMFWQGDLIKLVDADISKPA GSPAQEVEQVTEEDQEDGFLKLARTQQWVLGASDAPKNKKAIAKALQDDRERRKKLSFLKYEAEFFVPRPFCSCSFNQNMYMYFNTYTTVMRFLSALRCC FCHRFRSVTLCISLQLKRELMFLSIGIGTAGCGYCLVALSLQAAISYAVGVLFSCLYLQLLYRHSDNLSRKMVPSIFTQKKAKKIGIRSEDLRDSFEKTI KGSGIALSSPRLVIPATVYGLWALCHHYIGNEFFDFQIVPAMFGMFVYKAAALVQVYRDNEDLELVFPEM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22340			unknown protein		Lus10034185 [exp]	0	1
AT5G22340			unknown protein		Lus10043400 [exp]	2.0	0.9718
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	7.1	0.9580
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	9.9	0.9545
AT4G02725			unknown protein		Lus10014675 [exp]	11.8	0.9527
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	11.8	0.9506
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	13.7	0.9543
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	14.5	0.9517
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	14.8	0.9437
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	15.5	0.9462
AT4G02725			unknown protein		Lus10006915 [exp]	17.5	0.9488

Compare expression of checked genes

Lus10034185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.