Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08370 327 / 3e-110 DCP1, ATDCP1 decapping 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043399 [exp] 537 / 0 AT1G08370 375 / 2e-129 decapping 1 (.1) Lus10017007 [exp] 340 / 2e-115 AT1G08370 351 / 8e-120 decapping 1 (.1) Lus10021331 [exp] 276 / 1e-89 AT1G08370 305 / 1e-100 decapping 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160200 [exp] 416 / 1e-145 AT1G08370 377 / 7e-130 decapping 1 (.1) Potri.006G208600 [exp] 347 / 2e-118 AT1G08370 335 / 1e-113 decapping 1 (.1) Potri.016G075200 [exp] 290 / 9e-96 AT1G08370 294 / 1e-97 decapping 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06058 [flax] [poplar] DCP1 Dcp1-like decapping family
Representative CDS sequence Show only first row Show all	>Lus10034186 pacid=23154644 polypeptide=Lus10034186 locus=Lus10034186.g ID=Lus10034186.BGIv1.0 annot-version=v1.0 ATGTCGCAGAACGGGAAATTAATGCCGAATCTGGACCAGCAGAGCACCAAACTCCTTAATCTAACAGTTCTCCAGCGAATCGACCCTTTCGTTGAAGAAA TCCTCATCACCGCTGCCCACGTCACTTTGTACGAGTTCAACGTCGACCTCACCCAATGGAGCCGCAAGGATGTCGAAGGATCTCTGTTCGTTGTCAAGAG AAATGCGCAGCCTCGGTTTCAGTTCATTGTGATGAATCGACGCAGTACAGATAACTTGGTGGAAGATCTATTGGGAGATTTTGAGTTTGAGCTTCAGCTT CCATATCTCTTGTATCGAAATGCTGCCCAGGAAGTGAATGGGATTTGGTTTTACAATGCCCGGGAATGTGAAGACGTTGCCAATTTGTTTACCAGGATAT TAAATGCATATGCCAAGGTGCCTCCAAAGTCAAAGGTGTCATCAACTAAGAGTGAGTTTGAAGAACTTGAAGCTGTTCCAACCATGGCAGTTATGGATGG TCCTTTGGAGCCTTCTTCTGTAGCAGTCTCGAGTGTTTCGGACGTGCCTGATGATCATGCCTTCATCAACTTCTTTAGTACTATGAGCATTGGGACTGCT GTGATGAATGTAGCGACTCCTGGACAAGCTTATCAGTCTCCAAGTCCAGTCTCTATAGCTTCACTCCCTTCGTCAGTGGCTTCAAGTCCAATGCCAAACA TGCAGACATCATTTCCTCTGCTGGCATCGAGCCCTTTAATGCCACTACTCGATGCCCCTGATGTTGCTGGAGACAACAAGAGGACCACTAATCTTCTGAA CCCTTCGCTCTTCATTGTCCCCCCTCCATCCTCATCTTCAGTACAGACAATCATGCCTGCTGTTTCATCCATTCCTACGGCTCCTCCACTGAATCCTACA GCTGGTCTACAACGTCCTTATGGTGCTCCATTGCTTCAACCTTTTCCACCACCTACACCACCTCCATCCCTAACTCCTGTTTCTGTTCCTGCTGCAAATT ATGGGCCAGTAATAAGCAGAGAGAAGGTCCGGGATGCCCTTTTGGTCCTTGTCCAGGACAATCAATTCATCGACATGGTGTATCGGGCATTGTTGAATGC ACACAATTCTTAG
AA sequence Show only first row Show all	>Lus10034186 pacid=23154644 polypeptide=Lus10034186 locus=Lus10034186.g ID=Lus10034186.BGIv1.0 annot-version=v1.0 MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTLYEFNVDLTQWSRKDVEGSLFVVKRNAQPRFQFIVMNRRSTDNLVEDLLGDFEFELQL PYLLYRNAAQEVNGIWFYNARECEDVANLFTRILNAYAKVPPKSKVSSTKSEFEELEAVPTMAVMDGPLEPSSVAVSSVSDVPDDHAFINFFSTMSIGTA VMNVATPGQAYQSPSPVSIASLPSSVASSPMPNMQTSFPLLASSPLMPLLDAPDVAGDNKRTTNLLNPSLFIVPPPSSSSVQTIMPAVSSIPTAPPLNPT AGLQRPYGAPLLQPFPPPTPPPSLTPVSVPAANYGPVISREKVRDALLVLVQDNQFIDMVYRALLNAHNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10034186 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	3.2	0.7665
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	5.5	0.7554
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	8.0	0.7377
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10034240 [exp]	8.2	0.7728
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	21.4	0.6306
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	22.4	0.6776
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10040359 [exp]	23.7	0.7372
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	30.3	0.7035
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	33.2	0.6703
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	40.8	0.7266

Compare expression of checked genes

Lus10034186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.