Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38660 472 / 1e-167 Amino acid dehydrogenase family protein (.1.2.3.4) AT4G00620 415 / 5e-145 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT3G12290 363 / 1e-125 Amino acid dehydrogenase family protein (.1) AT4G00600 332 / 3e-113 Amino acid dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043398 [exp] 734 / 0 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10006425 [exp] 414 / 1e-144 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10011368 [exp] 413 / 2e-144 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 408 / 4e-143 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 407 / 1e-142 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10022670 [exp] 406 / 3e-138 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 340 / 3e-112 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114100 [exp] 483 / 5e-172 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.002G157100 [exp] 410 / 3e-143 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.011G098600 [exp] 358 / 8e-124 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.014G080701 [exp] 73 / 3e-16 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034187 pacid=23154696 polypeptide=Lus10034187 locus=Lus10034187.g ID=Lus10034187.BGIv1.0 annot-version=v1.0 ATGATTGTGACGACAATGCTGCTTAGGAGGATAATGGGAGAAAAGATAGCTACTTGGGTTGGCACTCCGCTCAAGGGTTTAATGGCGGCAACTAAAAGAG GTTTAAGCACGCAAGTTCTCAAGTCTCCTTTATATCTTACCTCTCTTGACATGCCTGATATTTGGGCTCCCAACTCCATGGATTGTGCTCCTTCTACATC CCCTAACTACTCTTGTGAGCAGGATGCTGCTGCTGTTATTGACGGAAAATCAATTGCAGAAGAAATTAGGTCGACAATAGCTAGTGAAGTGTCCAGGATG AGAAGATGCATTGGAAAGGTCCCTGGTTTGGCTGTTATTTTGGTAGGTCAGAGAATTGACTCTTTGACTTACGTTCGCAACAAGATAAAAGCTTGTGAAG AAGCTGGAATCAAGTCCCTATTGGTTCAACTTCCTGAGGATTGCACAGAAGATTCAGTTCTCAGAGAATTGTCTCGTTTTAACAATGACTCTTCCATTCA TGGTGTTCTTATCCAGCTTCCTCTACCAAAACATTTGAATGAAGAGAAGATCTTGAATTTGGTGAATTTAGAGAAAGATGTAGATGGCTTTCATCCGGTG CATATCGGGAATCTTGCGATGAGGGGAAGGGAACCTTTGTTCATCTCATGCACTCCGAAAGGTTGCATTGAATTATTGATCAGGTCAGGCGTGCAAATCA TGGGAAAGCATGCTGTAGTCATTGGAAGAAGTAACATTGTCGGTTTACCTACATCACTTTTGTTGCAGAGGCACCATGCAACTGTCAGCATCGTCCATGC ATTATCAGAAAGTCCAGAGCTGACCACCAGAAAAGGTGACATAATAGTTGCAGCTGCTGGAGTGCCGAATCTAGTACGAGGCGACTGGTTAAAGCCGGGT GCAGTGGTCATCGATGTGGGAACATGCCCAGTTGAGGATCCAACTAGCGAATTTGGTTACCGTCTGGTGGGAGATGTGTGTTATGAGGAAGCAGCCAGGA TAGCATCGGCCATAACCCCAGTTCCTGGAGGAGTTGGACCCATGACGATTGCTATGCTTTTAGCTAACACTCTTGATGCTGCCAAGCGCGTTTGTGATTT TACTTGA
AA sequence Show only first row Show all	>Lus10034187 pacid=23154696 polypeptide=Lus10034187 locus=Lus10034187.g ID=Lus10034187.BGIv1.0 annot-version=v1.0 MIVTTMLLRRIMGEKIATWVGTPLKGLMAATKRGLSTQVLKSPLYLTSLDMPDIWAPNSMDCAPSTSPNYSCEQDAAAVIDGKSIAEEIRSTIASEVSRM RRCIGKVPGLAVILVGQRIDSLTYVRNKIKACEEAGIKSLLVQLPEDCTEDSVLRELSRFNNDSSIHGVLIQLPLPKHLNEEKILNLVNLEKDVDGFHPV HIGNLAMRGREPLFISCTPKGCIELLIRSGVQIMGKHAVVIGRSNIVGLPTSLLLQRHHATVSIVHALSESPELTTRKGDIIVAAAGVPNLVRGDWLKPG AVVIDVGTCPVEDPTSEFGYRLVGDVCYEEAARIASAITPVPGGVGPMTIAMLLANTLDAAKRVCDFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38660			Amino acid dehydrogenase famil...		Lus10034187 [exp]	0	1
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10024079 [exp]	26.1	0.4863
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10042368 [exp]	66.3	0.4656
AT2G26920			Ubiquitin-associated/translati...		Lus10024080 [exp]	66.6	0.4877

Compare expression of checked genes

Lus10034187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.