Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34630 677 / 0 unknown protein AT5G51150 129 / 4e-32 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043395 [exp] 501 / 2e-176 AT1G34630 374 / 2e-128 unknown protein Lus10043005 [exp] 100 / 2e-22 AT5G51150 780 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032508 [exp] 98 / 2e-21 AT5G51150 775 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096500 [exp] 733 / 0 AT1G34630 667 / 0.0 unknown protein Potri.015G111200 [exp] 130 / 1e-32 AT5G51150 767 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G113700 [exp] 120 / 3e-29 AT5G51150 744 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.005G165100 [exp] 100 / 1e-25 AT1G34630 92 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034188 pacid=23154850 polypeptide=Lus10034188 locus=Lus10034188.g ID=Lus10034188.BGIv1.0 annot-version=v1.0 ATGTCGCCCTTCTGCGACGCTGTCGTTCACGGCGGCGACGCCGATGATGGCACAAACCTCTGTCTTGACCCTGACTGCTCCCATTGCTCCAGATCGGATC CTGCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTATTCTTTGTTTGCTAAGTTAGATTCACTAGTGGAATTGAATGATTCGGATAAGCTTCGGAGAATTAT TATTGCCTCCGTCAAAGGCTTCTCCATTGGCGCCGGACTCAAAGGAGGTTTAGCTCTTTTCTCCATTCTCGCTCGCCTCCGCCGCACCAGAAAGCCTCGG GAGTTTACTGATAGTGAAGCCATCACTTTAGCCCTCAAGGAGACTCTCAGATACGGATTGTTCCTCGGAACTTTCGCCGGCACGTTTGTGTCCGTCGACG AGATTATTGCCGCTTTGGGTGGTCACCGTAGGCAAGCGACTGGGAAATGGAGAGCTTTAGTAGCAGGTCTGGTTGCCGGGCCTTCAATGCTTCTTACGGG TCCCAATACTCAGCATACTAGCTTGGCTATCTACATACTGATGCGTGCTGCTGTTTTGGCTTCCCGCTGTGGGATTAAGAGCAAACGCTTTGGCAAATAC TGCAAGCCTCTCACTTGGAAGCACGGCGATCTTTTTCTAATGTGTCTCTCCTCTTCACAAATCTTGTCAGCATACATATTGAAACAAGAAAGTTTGCCGC CATCATACAAATCCTTTCTTAACAAGCACGGTGGAAAGGATCTATCTATCCTACAAGGTGTCAAAGATATTGCCAGTGGCCTGCCTTTCTCAAATTTGGA TGTGATAGAGAAATATTACAACTCTATAGGAGTAGACATCAAGTTGGATCCTCAAATGAAAATCCCCTGCACCATAATACACGGAAATCAATCCTGTAGT GGTCACGTGGCTTCTTTTTTTGTTGAAGCATATAAACGAGCGTTGCCAGTATATCTTCCAGTTTATTTAATTCCTGCATTGATAGTTCATCGCCAAGGTC TCTCAAAAAGACCTTACAGCATACTGGGGAAGGGTCTTTTTGGCACTGCAAGATCAAGCTTATTTCTCTCTGTATATTGCTCATCTGCTTGGATGTGGAC GTGCTTCCTCTTCAGAATATTTAAGAGATGCAATGTTCCAATGGTGGCGATGGGGACGTTTCCGACGGGTCTGGCACTGGCAATAGAGAAGAAAAGCAGG AGGATAGAGATATCACTCTACTGCCTGGCAAGGGCAATAGAGAGCTTCTTCACATGCATGGGGGAAGTTGGGTATTTGCCACAATTCACAAAAGTGAATA GAGCAGATGTGGTAGTTTTCAGCATTTCAACTGCCATAATCATGCATTGTTACGCGCAGGAGCGAGAAGTGTTCCGGTCCAAGTACCTTAATGTACTTGA CTGGGTGTTTGGAGTCCCTCCTCCGCCCGATGAGAGCCCTCGCTACTGCAAACCAAAATGA
AA sequence Show only first row Show all	>Lus10034188 pacid=23154850 polypeptide=Lus10034188 locus=Lus10034188.g ID=Lus10034188.BGIv1.0 annot-version=v1.0 MSPFCDAVVHGGDADDGTNLCLDPDCSHCSRSDPASSSSSSSSSYSLFAKLDSLVELNDSDKLRRIIIASVKGFSIGAGLKGGLALFSILARLRRTRKPR EFTDSEAITLALKETLRYGLFLGTFAGTFVSVDEIIAALGGHRRQATGKWRALVAGLVAGPSMLLTGPNTQHTSLAIYILMRAAVLASRCGIKSKRFGKY CKPLTWKHGDLFLMCLSSSQILSAYILKQESLPPSYKSFLNKHGGKDLSILQGVKDIASGLPFSNLDVIEKYYNSIGVDIKLDPQMKIPCTIIHGNQSCS GHVASFFVEAYKRALPVYLPVYLIPALIVHRQGLSKRPYSILGKGLFGTARSSLFLSVYCSSAWMWTCFLFRIFKRCNVPMVAMGTFPTGLALAIEKKSR RIEISLYCLARAIESFFTCMGEVGYLPQFTKVNRADVVVFSISTAIIMHCYAQEREVFRSKYLNVLDWVFGVPPPPDESPRYCKPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34630			unknown protein		Lus10034188 [exp]	0	1
AT5G36250			Protein phosphatase 2C family ...		Lus10022588 [exp]	7.7	0.7734
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	7.7	0.7735
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	9.6	0.7774
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	11.9	0.7761
AT1G71900			Protein of unknown function (D...		Lus10015480 [exp]	14.5	0.7658
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	21.0	0.7624
AT5G06560			Protein of unknown function, D...		Lus10012288 [exp]	21.3	0.7654
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	23.2	0.7641
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	24.6	0.7682
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	30.5	0.7620

Compare expression of checked genes

Lus10034188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.