Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22360 376 / 2e-134 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT4G32150 267 / 3e-91 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT2G25340 265 / 2e-90 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT5G11150 261 / 7e-89 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT1G04750 144 / 4e-43 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 144 / 9e-43 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G33120 143 / 2e-42 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT3G54300 142 / 7e-42 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G32670 141 / 4e-41 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT4G15780 135 / 2e-39 ATVAMP724 vesicle-associated membrane protein 724 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043394 [exp] 425 / 9e-154 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10041035 [exp] 255 / 5e-87 AT5G11150 343 / 9e-122 vesicle-associated membrane protein 713 (.1) Lus10006192 [exp] 257 / 7e-86 AT5G11150 345 / 9e-121 vesicle-associated membrane protein 713 (.1) Lus10001492 [exp] 250 / 3e-84 AT5G11150 367 / 1e-130 vesicle-associated membrane protein 713 (.1) Lus10022804 [exp] 150 / 2e-45 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 150 / 2e-45 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 150 / 2e-45 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 147 / 3e-44 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 145 / 2e-43 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219200 [exp] 393 / 3e-141 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1) Potri.009G018900 [exp] 389 / 2e-139 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.006G256200 [exp] 274 / 5e-94 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1) Potri.018G025800 [exp] 270 / 1e-92 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.018G125900 [exp] 220 / 1e-72 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.012G119600 [exp] 145 / 3e-43 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 144 / 5e-43 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 143 / 1e-42 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 142 / 4e-42 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 141 / 1e-41 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10034189 pacid=23154866 polypeptide=Lus10034189 locus=Lus10034189.g ID=Lus10034189.BGIv1.0 annot-version=v1.0 ATGGCGATTCTCTACGCGGTGGTGGCTCGGGGAACCGTTGTGCTTGCGGAATTCAGCGCCGTGACGGGCAATACCGGGGCTGTGGCGCGGCGTATTCTGG AGAAGCTGCCGACCGATGGTGATTCCAGGGTATGCTTTTCACAGGATCGATACATATTCCACATACTCAGATCCGACGGCCTCAGCTTCCTTTGTATGGC CAACGATACATTTGGCAGGAGAATCCCATTTTCGTACTTGGAGGACATTCACATGAGATTCATGAAGAACTATGGCAGGGTTGCTCCGTATGCACCTGCA TATGCAATGAATGATGAGTTCTCAAGGGTGTTGCATCAGCAAATGGAATTCTTCTCTAGTAACCCCACTGCCGATACTCTGAATCGTGTTAGGGGTGAAG TGGGCGAGCTTCGAACAATAATGGTGGACAACATTGAGAAAATATTGGAGAGAGGTGACAAGATTGAGCTTCTTGTTGATAAAACTGCGACAATGCAAGA TGGTGCGTTTCACTTCAGGAAACAGTCTAAACGCCTCCGCCGGGCTCTTTGGATGAAGAACGCCAAGCTTTTGGCGCTGTTAACGGTGGTGATTGTTGCG TTGCTCTACTTTCTCATTGCTGCTTTCTGCGGGGGTATCACACTACCTTCGTGCAGATCGTGA
AA sequence Show only first row Show all	>Lus10034189 pacid=23154866 polypeptide=Lus10034189 locus=Lus10034189.g ID=Lus10034189.BGIv1.0 annot-version=v1.0 MAILYAVVARGTVVLAEFSAVTGNTGAVARRILEKLPTDGDSRVCFSQDRYIFHILRSDGLSFLCMANDTFGRRIPFSYLEDIHMRFMKNYGRVAPYAPA YAMNDEFSRVLHQQMEFFSSNPTADTLNRVRGEVGELRTIMVDNIEKILERGDKIELLVDKTATMQDGAFHFRKQSKRLRRALWMKNAKLLALLTVVIVA LLYFLIAAFCGGITLPSCRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	1.0	0.9131
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	1.4	0.9054
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	3.2	0.8744
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	3.6	0.8697
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10015144 [exp]	4.0	0.8564
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	5.5	0.8929
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	5.9	0.8885
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	6.0	0.8924
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	6.0	0.8878
AT2G35680			Phosphotyrosine protein phosph...		Lus10004376 [exp]	6.9	0.8814

Compare expression of checked genes

Lus10034189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.