Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15040 119 / 4e-33 Protein of unknown function, DUF584 (.1) AT1G11700 71 / 6e-15 Protein of unknown function, DUF584 (.1) AT4G04630 69 / 1e-14 Protein of unknown function, DUF584 (.1) AT4G21970 67 / 3e-14 Protein of unknown function, DUF584 (.1) AT4G21930 66 / 2e-13 Protein of unknown function, DUF584 (.1) AT3G45210 64 / 4e-13 Protein of unknown function, DUF584 (.1) AT1G61930 62 / 5e-12 Protein of unknown function, DUF584 (.1) AT2G34340 61 / 8e-12 Protein of unknown function, DUF584 (.1) AT5G60680 61 / 1e-11 Protein of unknown function, DUF584 (.1) AT5G03230 61 / 2e-11 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004207 [exp] 88 / 3e-21 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10029411 [exp] 87 / 4e-21 AT3G15040 112 / 3e-30 Protein of unknown function, DUF584 (.1) Lus10021309 [exp] 81 / 1e-18 AT3G15040 99 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10016988 [exp] 73 / 7e-16 AT3G15040 87 / 8e-21 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 70 / 7e-15 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 70 / 9e-15 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 69 / 1e-14 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 69 / 2e-14 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 66 / 4e-14 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G076300 [exp] 102 / 7e-27 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.006G209500 [exp] 80 / 5e-18 AT3G15040 65 / 3e-12 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 69 / 2e-14 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 68 / 3e-14 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 68 / 4e-14 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 67 / 5e-14 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 67 / 2e-13 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 65 / 4e-13 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 62 / 5e-12 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 62 / 5e-12 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10034190 pacid=23154725 polypeptide=Lus10034190 locus=Lus10034190.g ID=Lus10034190.BGIv1.0 annot-version=v1.0 ATGGACATCAACGGATCTGCCCGCTTCCGCCATCGGAAATCCCCTTCCTCCGACCGCTTCCTCGGCGCCTTCTCACCCACTCCTCCCCGTCACGACGGTA GCCTCACTAATTTCTCTTCCTCCCAGGACACCGAGCTCAACGAGGACGATATTTTCTCCACCGGCGATTTCTCCGCCGAATCCTCCCGAAATCATCACTC CCAACAACAGAAGCAATACCTCACCCACAACAACAACCACTCGCCTTCCTCCACCGCGTCTTCCTCTTCCAACTCCTCTTCCCGTCTCATTCCGTCAATT CCGAAACCGCCGCAAGATAGGTTACCGGCCTCTTCGTCGTTTTCCAAGCACCACCACCATCCGCAGTCGGCGCCCGTCAACGTCCCGGTTCTCTCGAAGG CGATGAGGAGGAGGGACAGAGAGATTGACGAGATTGATGAAGACGAGGATGAAGATGACGGGGAGATGCTCCCTCCTCACGAGATCGTGGCTAGGTCTCA GACGCCGGACGTTGCCTTCTCCGTGCTGGAAGGCGTTGGGAGGACGCTAAAAGGGAGGGATCTGAGACAGGTAAGAAATGCCGTGTGGCGGAAAACTGGG TTCTTAGATTGA
AA sequence Show only first row Show all	>Lus10034190 pacid=23154725 polypeptide=Lus10034190 locus=Lus10034190.g ID=Lus10034190.BGIv1.0 annot-version=v1.0 MDINGSARFRHRKSPSSDRFLGAFSPTPPRHDGSLTNFSSSQDTELNEDDIFSTGDFSAESSRNHHSQQQKQYLTHNNNHSPSSTASSSSNSSSRLIPSI PKPPQDRLPASSSFSKHHHHPQSAPVNVPVLSKAMRRRDREIDEIDEDEDEDDGEMLPPHEIVARSQTPDVAFSVLEGVGRTLKGRDLRQVRNAVWRKTG FLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15040			Protein of unknown function, D...		Lus10034190 [exp]	0	1
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	2.8	0.8890
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	7.7	0.8944
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	8.2	0.8942
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	11.2	0.9152
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	12.3	0.8823
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	12.6	0.8884
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	12.6	0.8833
					Lus10013034 [exp]	14.8	0.9061
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	15.6	0.8764
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Lus10035373 [exp]	26.3	0.8867

Compare expression of checked genes

Lus10034190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.