Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18970 136 / 4e-40 GLP4 germin-like protein 4 (.1) AT1G18980 124 / 1e-35 RmlC-like cupins superfamily protein (.1) AT1G09560 120 / 7e-34 GLP5 germin-like protein 5 (.1) AT3G04200 116 / 4e-32 RmlC-like cupins superfamily protein (.1) AT1G02335 114 / 1e-31 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G38910 114 / 2e-31 RmlC-like cupins superfamily protein (.1) AT3G04150 114 / 3e-31 RmlC-like cupins superfamily protein (.1.2) AT3G05950 113 / 4e-31 RmlC-like cupins superfamily protein (.1) AT3G10080 113 / 5e-31 RmlC-like cupins superfamily protein (.1) AT3G62020 112 / 7e-31 GLP10 germin-like protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043393 [exp] 310 / 9e-109 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10004856 [exp] 219 / 1e-72 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 214 / 1e-70 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004855 [exp] 214 / 1e-70 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 202 / 2e-66 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10020632 [exp] 202 / 3e-66 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004857 [exp] 201 / 9e-66 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004858 [exp] 174 / 7e-55 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10023351 [exp] 119 / 3e-33 AT3G05950 236 / 5e-79 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 224 / 7e-75 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 217 / 4e-72 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.010G240500 [exp] 210 / 3e-69 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240700 [exp] 207 / 2e-68 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.008G016700 [exp] 207 / 2e-68 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240600 [exp] 206 / 1e-67 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G084300 [exp] 201 / 9e-66 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.013G116500 [exp] 167 / 1e-52 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.011G163216 [exp] 125 / 8e-36 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 125 / 1e-35 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10034191 pacid=23154718 polypeptide=Lus10034191 locus=Lus10034191.g ID=Lus10034191.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTAACAGCGCCTCATCTTCTCAAGTTTTTCTGCATCCTCATGGCTGCATTTTCCATGGCTCAGATGGTAGTAGCTAGTGATCCTGATATCC TTAGCGACTTCATTCTCCCCGACAGCCAAACCGAGGTGGATGCATCGTTCTTCACTTACACAGGAGCTCGAGGCATTTTGGATTCAGACAACCCTCCTTC AGTAACAGAAGTGAGCATGGCTGAGTTTCCTGCTCTTAATGGACAAGGTGTTTCCTATGCTGTTCTTCAGTTACCAGCCGGATCTACTTATCCTCCTCAC AGTCATCCTCGTGCTTCCGAGATCCTTCTTGTCATCCGTGGATGTGTTGAGGTAGGACTTGTCGTAGCAAACAACTGTCTCTACAATCAGACACTGTATG TCGGGGACATGTTTGTTTTCCCCAAGGGACTTGTTCATTTTGCATTCAATGGTGGGGATGAAGCCGCTACTGCACTTTCTGCATTTGGAAGTGCAAGTCC AGGAATGGTTTCGCTTCCGGATTCACTTTTCACTAGCAACATCGACGATGCCATCTTGGCTAGTTCCTTCAAGACCAACGTGAACATCATTCAGTCCATT AAGGATGGTTTTCAGTAA
AA sequence Show only first row Show all	>Lus10034191 pacid=23154718 polypeptide=Lus10034191 locus=Lus10034191.g ID=Lus10034191.BGIv1.0 annot-version=v1.0 MASLTAPHLLKFFCILMAAFSMAQMVVASDPDILSDFILPDSQTEVDASFFTYTGARGILDSDNPPSVTEVSMAEFPALNGQGVSYAVLQLPAGSTYPPH SHPRASEILLVIRGCVEVGLVVANNCLYNQTLYVGDMFVFPKGLVHFAFNGGDEAATALSAFGSASPGMVSLPDSLFTSNIDDAILASSFKTNVNIIQSI KDGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	0	1
					Lus10034192 [exp]	1.4	0.9602
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	2.0	0.9515
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10021780 [exp]	2.2	0.9458
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10035174 [exp]	2.8	0.9480
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	3.9	0.9489
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	6.3	0.9260
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	6.5	0.9376
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	11.5	0.9254
AT4G29780			unknown protein		Lus10011946 [exp]	12.1	0.9277
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	12.6	0.9090

Compare expression of checked genes

Lus10034191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.