Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 199 / 1e-59 SD2-5 S-domain-2 5 (.1) AT5G24080 140 / 9e-40 Protein kinase superfamily protein (.1) AT2G19130 134 / 2e-36 S-locus lectin protein kinase family protein (.1) AT1G34300 132 / 6e-36 lectin protein kinase family protein (.1) AT5G35370 116 / 2e-30 S-locus lectin protein kinase family protein (.1) AT5G20050 115 / 2e-30 Protein kinase superfamily protein (.1) AT5G60900 113 / 3e-29 RLK1 receptor-like protein kinase 1 (.1) AT4G00340 104 / 2e-26 RLK4 receptor-like protein kinase 4 (.1) AT1G56120 92 / 8e-22 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 92 / 9e-22 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043391 [exp] 305 / 5e-100 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 192 / 4e-57 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 189 / 3e-56 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10039315 [exp] 142 / 3e-39 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 129 / 7e-35 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013659 [exp] 120 / 7e-34 AT5G20050 244 / 8e-79 Protein kinase superfamily protein (.1) Lus10028711 [exp] 124 / 2e-33 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10033032 [exp] 120 / 3e-32 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10031804 [exp] 113 / 1e-30 AT5G60900 234 / 2e-71 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027300 [exp] 209 / 1e-63 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 207 / 4e-63 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.015G026300 [exp] 137 / 9e-38 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086200 [exp] 137 / 1e-37 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 137 / 1e-37 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 135 / 7e-37 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 133 / 3e-36 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 129 / 5e-35 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.018G070800 [exp] 124 / 7e-34 AT5G20050 516 / 0.0 Protein kinase superfamily protein (.1) Potri.019G119200 [exp] 117 / 7e-31 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034193 pacid=23154698 polypeptide=Lus10034193 locus=Lus10034193.g ID=Lus10034193.BGIv1.0 annot-version=v1.0 ATGAACCGCGAGGACAGCGGTGTTTACACGATGGTTCGAGGGACGAGAGGATACTTGGCTCCCGAATGGATATCGAACCATCCCATATCGGAGAAGAGCG ATGTGTACAGCTACGGCATACTGCTTCTTGAGATAATTGGAGGCAGGAAGAACTACGACTCTGAAGAAAGTTCTGAAAGGTCTCATTTCCCATCGTTCTC GTTGAAGATGTTCGAAGAAGGGAAGCTGAGAGACATCGTGGATCCAAAGCTGGTGATCGACGATGAAAATGACATCGATGTAATGAATGCAATCAAGATA GCATTGTGGTGCATTCAGGATGAGATGCAGCTAAGACCACCAATGACTAGAGTAGTCCAAATGCTTCAAGGAATATGCGAGGTTCCTGATCCTCCGATGC CATCTGAATCGGGCCCTCGGCCTTATACCAACTTCCTCAAGTGGAGTAGCAAAGAGGGGAACAGTTCAGGCTTTAGTAATTACAATTACAACAGCTGCAG CACGTTTGTGTCTGAGGGTCAGTTATCAGGTCCAAGATAA
AA sequence Show only first row Show all	>Lus10034193 pacid=23154698 polypeptide=Lus10034193 locus=Lus10034193.g ID=Lus10034193.BGIv1.0 annot-version=v1.0 MNREDSGVYTMVRGTRGYLAPEWISNHPISEKSDVYSYGILLLEIIGGRKNYDSEESSERSHFPSFSLKMFEEGKLRDIVDPKLVIDDENDIDVMNAIKI ALWCIQDEMQLRPPMTRVVQMLQGICEVPDPPMPSESGPRPYTNFLKWSSKEGNSSGFSNYNYNSCSTFVSEGQLSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034193 [exp]	0	1
AT2G39710			Eukaryotic aspartyl protease f...		Lus10000514 [exp]	2.6	0.7986
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	4.9	0.7969
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	5.9	0.7564
AT2G46080			unknown protein		Lus10007920 [exp]	7.7	0.7945
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10005326 [exp]	15.9	0.7727
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	16.7	0.7524
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	20.6	0.7776
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10023684 [exp]	20.7	0.7494
AT5G42050			DCD (Development and Cell Deat...		Lus10032412 [exp]	20.9	0.7907
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	27.9	0.7107

Compare expression of checked genes

Lus10034193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.