Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 189 / 1e-54 SD2-5 S-domain-2 5 (.1) AT1G78860 65 / 1e-11 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 64 / 3e-11 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G51710 64 / 3e-11 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 63 / 8e-11 S-locus lectin protein kinase family protein (.1) AT4G03230 60 / 6e-10 S-locus lectin protein kinase family protein (.1) AT1G78820 58 / 2e-09 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G61400 58 / 4e-09 S-locus lectin protein kinase family protein (.1) AT1G78830 57 / 4e-09 Curculin-like (mannose-binding) lectin family protein (.1) AT1G11300 57 / 9e-09 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043391 [exp] 425 / 2e-144 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 204 / 1e-59 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 198 / 1e-57 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 69 / 1e-12 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10022495 [exp] 68 / 1e-12 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024343 [exp] 66 / 7e-12 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10025617 [exp] 64 / 4e-11 AT5G35370 469 / 2e-156 S-locus lectin protein kinase family protein (.1) Lus10017247 [exp] 64 / 5e-11 AT1G11340 503 / 2e-166 S-locus lectin protein kinase family protein (.1) Lus10000579 [exp] 63 / 6e-11 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254600 [exp] 225 / 1e-67 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 217 / 1e-64 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.002G086500 [exp] 87 / 6e-19 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 86 / 1e-18 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.015G026300 [exp] 68 / 1e-12 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.016G053800 [exp] 66 / 6e-12 AT2G41890 768 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.019G086400 [exp] 65 / 1e-11 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.011G066200 [exp] 65 / 2e-11 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.016G102600 [exp] 64 / 3e-11 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 64 / 3e-11 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10034194 pacid=23154657 polypeptide=Lus10034194 locus=Lus10034194.g ID=Lus10034194.BGIv1.0 annot-version=v1.0 ATGGCTGCTTATCTATTGCTTTGGCTGTGTCTCTTTTGTTTGTTTCTATGTTCCGTACTGGAAACCAGTACAGCTGTACCTCAGCAAGTTGGGGCTATAT ACCCTGGTTTTGAAGCATCCCAGATGGGTTTTGTTGAGAAGAGAGGCATTTTCCTGGTTTCTCAAAACTCAACATTTGGATTTGGATTCTTCACTACTTT AGATGATCACCTCTTTGTGCTTGTTGTCGTCCATACCAAGAGTGGGAAAGTGGTTTGGACAGCCAACAGAGGATTATTAGTTAACAATTCTGATAGATTC GTGTTTGACTCAAGCGGGAATGCTTCTCTACATAGAGGGGAAGGTGTGGTTTGGACTTCTAATACAGGTAGAAGAAATGGAGGAAAAGTTGATTCGATGG AATTGATGGAGTCAGGGAACTTGGTCTTGCTTGACGGCGAAAGAAGGGTTCTTTGGGAGAGTTTTCACCACCCAACAGATACCCTTTTACCTGGCCAGGA GTTCACAGAAGAAATGGCTCTCAAAAGTTTCCCAAACAAGAACAATCTGTCCAATTTTCTTCAGATTATGTCTGGGGATCTGGTCTTGTATGCTGGGTAT AGAACTCCTCAGGTTTATTGGTCTCTCAAACAGGACAGTAGAAGAACTACTAATAACACTGTTACAGCAAGCCGGGTTCTTCATTCTGCTTCTTTAGAGT CCAATTCATGGAACTTTTATGACAACGAAAGATTGTTGCTTTGGCAGTTTAAATTCTCCAACAAAACTGATCCAAACTCTAGGTGGGCTGTGATTTTGGC CTCCAATGGAGGCATTGGTTTCTACAACCTTGAAATTGGAAGGTCAGTTATAGCTGAGCCAACTAAGATTGGAACACAAGGTTCAACATTGCTCTAG
AA sequence Show only first row Show all	>Lus10034194 pacid=23154657 polypeptide=Lus10034194 locus=Lus10034194.g ID=Lus10034194.BGIv1.0 annot-version=v1.0 MAAYLLLWLCLFCLFLCSVLETSTAVPQQVGAIYPGFEASQMGFVEKRGIFLVSQNSTFGFGFFTTLDDHLFVLVVVHTKSGKVVWTANRGLLVNNSDRF VFDSSGNASLHRGEGVVWTSNTGRRNGGKVDSMELMESGNLVLLDGERRVLWESFHHPTDTLLPGQEFTEEMALKSFPNKNNLSNFLQIMSGDLVLYAGY RTPQVYWSLKQDSRRTTNNTVTASRVLHSASLESNSWNFYDNERLLLWQFKFSNKTDPNSRWAVILASNGGIGFYNLEIGRSVIAEPTKIGTQGSTLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034194 [exp]	0	1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	5.5	0.8364
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	9.6	0.8161
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	10.5	0.8194
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	12.0	0.8116
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	14.8	0.7931
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	17.5	0.8094
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	22.3	0.7835
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	22.6	0.7810
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	23.7	0.8090
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	27.1	0.7839

Compare expression of checked genes

Lus10034194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.