Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52660 395 / 1e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 361 / 1e-120 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G28390 145 / 3e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 109 / 3e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 72 / 4e-13 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G27000 68 / 4e-12 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 62 / 2e-10 CP31B chloroplast RNA-binding protein 31B (.1) AT2G36660 62 / 6e-10 PAB7 poly(A) binding protein 7 (.1) AT4G24770 61 / 6e-10 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G22760 61 / 8e-10 PAB3 poly(A) binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043390 [exp] 679 / 0 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021351 [exp] 419 / 1e-143 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030207 [exp] 354 / 2e-118 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002689 [exp] 353 / 5e-118 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 194 / 3e-57 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10028162 [exp] 118 / 3e-28 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 108 / 9e-25 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 107 / 2e-24 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027886 [exp] 73 / 2e-13 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201900 [exp] 489 / 7e-171 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 476 / 4e-166 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G212400 [exp] 431 / 3e-148 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 431 / 3e-148 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 352 / 3e-117 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 341 / 3e-113 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G139700 [exp] 128 / 1e-31 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G116400 [exp] 125 / 8e-31 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 124 / 3e-30 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 122 / 1e-29 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10034195 pacid=23154858 polypeptide=Lus10034195 locus=Lus10034195.g ID=Lus10034195.BGIv1.0 annot-version=v1.0 ATGCCAACAGAGAAGGAAAATGCATCAACAGCTTCTAACCGTGGGGAACCTGTTGAATCTGATGAGAAGATTGATCTTAATGAAGACAATGACCCTGAGG AGGCTATGGATGAAGAGATTGAATATGAGGAAGTGGAGGAAGAAGAAGAAGTCGAAGAATATGTAGAGGAGGAAATAGAAGTTGAAGAGGAAGGAGAAGA ATCAGAGGATGATAACAATAATAATGATATTCAAGGTGGCGGCAATGGATATGATGATGAGAAGAAGAAGCATGCTGAGCTTCTTGCACTCCCACCGCAT GGTTCTGAAGTATACATGGGTGGCATTCCTCATAATACCACACAAGAGGATTTGAGAGGTTTTTGTGAGTCTATTGGAGAGGTTACAGAGGTTCGTATGA TGAAAGGAAAGAATCCAACTGACAGTAAGATTTTTGCGTTTGTGACCTTTAGAGGTGTGGACTTAGCATCAAAAGCTATTAAGGAGCTGAATAATTCTGA ATTCAAGGGTGCAAAAGTTAAATGTTCAACATCTCAAGCAAAGCATCGCTTGTTCCTTGGAAATATTCCTAGGAGTTGGAATGACGAAGATTTAAGGAAG GTCATGAACGAGGTTGGGCCTGGAGTTACTTCCATCCAATTGGTGAAGGATCCAAGGAACACCAGCAACAACAGAGGTTTTGGCTTCATAGATTACTACA ATAATTCATGTGCTGAATATTCAAGGCAAAAGATGACAGATACAAAATTTAAGCTAGGTGATAATTCACCAACTGTGAGCTGGGCTGATTCTAGGAGCAC GAATTCTGGAGCTGCTAGTCAGGTGAAGGCATTATATGTCAAGAATTTACCGAAAGATGTAACACAAGATCAGCTGAAGAAGCTATTTGAACATCATGGA CAAATCCCAAAGGTGGTGTTGCCACCAGCTAAACAAGGGCAGGAGAACAATAGAATTGGTTTCGTTCATTTTGCGGAGAGGTCCAGTGCCATGCAAGCAC TGAATAGCACTGAAAAATATGAATTAAATGGACAAACTTTGGAGTGTTCTCTTGCAAAACCACAAACAGATCAGAAAGCTGTTGGTCTTTTAAATATTCA GAACGCTGGTATACTTCCAACTTTCCCGCCCTATGCTGGTTACGGTTTGGGTGGAGCTCCCTATGGCTCCCTTGCAACAGGATATGGTGCTGCCCCCTTT GCACAGCCAATGATTTATGGCACTGGACCATCTCCTTCAGGCATGGCAATGATGCCAATGCTTCTACCTGACGGCCAGATTGGATATATACTCAAACTGT TTGACTTGACTGGCTCGCAATTGAAATTGGTCATTGGTCTGAGTTGA
AA sequence Show only first row Show all	>Lus10034195 pacid=23154858 polypeptide=Lus10034195 locus=Lus10034195.g ID=Lus10034195.BGIv1.0 annot-version=v1.0 MPTEKENASTASNRGEPVESDEKIDLNEDNDPEEAMDEEIEYEEVEEEEEVEEYVEEEIEVEEEGEESEDDNNNNDIQGGGNGYDDEKKKHAELLALPPH GSEVYMGGIPHNTTQEDLRGFCESIGEVTEVRMMKGKNPTDSKIFAFVTFRGVDLASKAIKELNNSEFKGAKVKCSTSQAKHRLFLGNIPRSWNDEDLRK VMNEVGPGVTSIQLVKDPRNTSNNRGFGFIDYYNNSCAEYSRQKMTDTKFKLGDNSPTVSWADSRSTNSGAASQVKALYVKNLPKDVTQDQLKKLFEHHG QIPKVVLPPAKQGQENNRIGFVHFAERSSAMQALNSTEKYELNGQTLECSLAKPQTDQKAVGLLNIQNAGILPTFPPYAGYGLGGAPYGSLATGYGAAPF AQPMIYGTGPSPSGMAMMPMLLPDGQIGYILKLFDLTGSQLKLVIGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	0	1
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	2.0	0.8866
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	3.3	0.8723
AT3G04560			unknown protein		Lus10022011 [exp]	3.5	0.8804
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	4.6	0.8948
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	4.9	0.8521
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	4.9	0.9103
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	5.3	0.8986
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	6.2	0.8650
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	7.3	0.8734
AT4G32910			unknown protein		Lus10011625 [exp]	9.2	0.8589

Compare expression of checked genes

Lus10034195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.