Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 676 / 0 glutaredoxin-related (.1) AT4G08550 247 / 2e-72 electron carriers;protein disulfide oxidoreductases (.1) AT3G13000 100 / 5e-22 Protein of unknown function, DUF547 (.1.2) AT2G23700 100 / 9e-22 Protein of unknown function, DUF547 (.1) AT1G16750 96 / 1e-20 Protein of unknown function, DUF547 (.1) AT5G66600 95 / 5e-20 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 88 / 5e-18 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 84 / 1e-16 Protein of unknown function, DUF547 (.1.2.3) AT1G43020 83 / 1e-16 Protein of unknown function, DUF547 (.1.2.3.4) AT5G47380 84 / 2e-16 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029074 [exp] 1216 / 0 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10012909 [exp] 886 / 0 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10030563 [exp] 824 / 0 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10033328 [exp] 100 / 6e-22 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 100 / 8e-22 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 97 / 1e-20 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10034787 [exp] 91 / 2e-18 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 89 / 6e-18 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10016114 [exp] 79 / 6e-16 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G097600 [exp] 828 / 0 AT3G11920 708 / 0.0 glutaredoxin-related (.1) Potri.008G144800 [exp] 827 / 0 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 410 / 4e-133 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.007G003900 [exp] 102 / 2e-22 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 94 / 8e-20 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.005G130000 [exp] 94 / 1e-19 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 90 / 2e-18 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 88 / 6e-18 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 87 / 1e-17 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 86 / 3e-17 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00610 [flax] [poplar] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [flax] [poplar] PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547 CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10034196 pacid=23176012 polypeptide=Lus10034196 locus=Lus10034196.g ID=Lus10034196.BGIv1.0 annot-version=v1.0 ATGGAATTAACCAACGGAGATGCACCGCCGCAGCATCTCTCCGAGAAAGCCGACGCGGTTCGGTCGGAGGAGGTCAGAGGAGATACCGAGGTAATTGATT TAAATTGCAGCGGAAACGGCGGCGAAAACAGAGCAGGAGTAAGCAATAACGACGTTGATCAGGTAGTTGAAGCGACGAAACAGCTTCTTCCGGAAACGGA AACCACGGATGAGGCGGAGGCGGTTGAGAATCATGACGATCGTGATTCTGATGATACTACATCCTCGACTAGTAGTACTACAACTATCGACGGCTATATA CAGGCGGTTTCTCCTCACTCGCAGCTTCCCAAGCCAGAGCCGCCGCCAGGTCTCTCGCCTACCGTTCCGCCGGCTGCTAATAAGGCAAACGAATTCGCTG GAATTCGCGCCGATTTTCTAGGGCGGTCAAAATCCCTAACGGAAACATTAGCAGCCGTCGAGATGCCGTCGATCGGGAGCTTCTTCAAGGAGCGGAGCAA CAGCTTGTCCGCAATCGCCAAGCGGTTGAGCCGAATCGGAGATTTCAAGAACGACGACGTTGAGAAAAGCCCGTCGTCACTCAAGAGCAAGAATAACGAG GAGTCGGATAACTTCGACGTGTCGGAGTACAACATATCGGGACTCAAAGTCGTCGTACGGATGAAGAGCGACGAAGCGATCAAGGGACGAATCAGCTTCT TCTCCAGGTCGAACTGCAGGGACTGCTCCGCTGTCCGGTCGTTTCTGAAACAGAGAGGGCTCCGATTCGTGGAAATCAACGTCGACGTGTATCCGCAGAG GGAGAAGGAATTGATCGAGCGGACGGGGAAATCTCAGGTCCCGCAGATTTTCTTCAACGAGAAGCTTTTCGGCGGACTAGTTGCTTTAAATTCGCTGAGG AACAGCGGCGAGCTGGAGGCGAAATTGAAGGAGATGTTAGGGAAGGCCTGCCCCGGTGATGCGCCTGCTGCGCCGGTGTACGGATTCGACGACCCGGAAG AAGAGGAGGAGGCGGAGCAGGAGGAGGAGATGGTAGGGACTGTGAAGGTGTTGAGGCAGAAGCTTCCGATTGAGGACCGTCTGGTTAAGATGAAGATCGT TCGGAATTGCTTCACCGGAGCTCAGATGGTTGAGGTGCTGATTCAACACTTGGATTGTGGCCGGAAGAAGGCTGTTGAGATCGGCAAGCAGCTAGCCAGG AGGCACTTCATCCATCATGTATTTGGGGAGAATGAGTTTGAAGATGGGAATAATCACCTGTACCGCTTCCTGGAGCACGAACCATTCATCCCAAAGAGCT ACAACTTCCGGGGAACAACAAACGACTGCAACCCAAAACCTGCAGCTACCGTCGGGAAAAGGCTGTACAAGATAATGTCAGCAATTCTCGAATCTTACGC TTCAGATGACAGAAGACACGTCGATTATACTTCCATCAGCAAAACAGAGGAATTCCGCAGATACGTGAACCTGGTGGAGGATCTGCAGCGAGTGGATATG GCGGGAATGTCTGAGAACGAGAAAATATCGTTCTTTTTGAATTTGTACAACGCCATGGTGATCCATGCTGTGATCAGAGTGGGTGGTCCAGAAGGGGTGA CAGATAGGAGATCTTTTTACTCTGATTTCCAGTACATAGTTGGAGGATTGGCGTACTCTCTCAACGCGATTAAGAACGGTGTTCTCAGGAACAACCGACG GTCTCCTTACTCGCTGATCAAGCCCTTTGGGTCCGGTGACAAACGCTTAGAGATTGCAGTGGACAAAGTGAACCCGCTGATCCATTTCGGGCTATGCAAC GGAACAAAATCGAGCCCAACAGTGAGGTTCTTCACGTCACAAGGGCTGGAGGCCGAGCTGAGAAGTGCCGCAAGAGAGTTCTTCCAGACATCAGGCGGGA TCGAAGTCGACTTAGAGACAAGGACCGTGCACCTCTCTCGTGTCATGAAGTGGTTTGGGGGTGACTTTGGGGAAGAGAAGGAGATAGTGAGATGGGTGAT GAGTTACTTGGACGGCAACAAGGCTGGACTTGTTACTCATCTCTTGTCCGATGGAGGTGCTGTTCACGTTGTGTACCAAAGCTATGAATGGGCTCTCAAT TCTTAG
AA sequence Show only first row Show all	>Lus10034196 pacid=23176012 polypeptide=Lus10034196 locus=Lus10034196.g ID=Lus10034196.BGIv1.0 annot-version=v1.0 MELTNGDAPPQHLSEKADAVRSEEVRGDTEVIDLNCSGNGGENRAGVSNNDVDQVVEATKQLLPETETTDEAEAVENHDDRDSDDTTSSTSSTTTIDGYI QAVSPHSQLPKPEPPPGLSPTVPPAANKANEFAGIRADFLGRSKSLTETLAAVEMPSIGSFFKERSNSLSAIAKRLSRIGDFKNDDVEKSPSSLKSKNNE ESDNFDVSEYNISGLKVVVRMKSDEAIKGRISFFSRSNCRDCSAVRSFLKQRGLRFVEINVDVYPQREKELIERTGKSQVPQIFFNEKLFGGLVALNSLR NSGELEAKLKEMLGKACPGDAPAAPVYGFDDPEEEEEAEQEEEMVGTVKVLRQKLPIEDRLVKMKIVRNCFTGAQMVEVLIQHLDCGRKKAVEIGKQLAR RHFIHHVFGENEFEDGNNHLYRFLEHEPFIPKSYNFRGTTNDCNPKPAATVGKRLYKIMSAILESYASDDRRHVDYTSISKTEEFRRYVNLVEDLQRVDM AGMSENEKISFFLNLYNAMVIHAVIRVGGPEGVTDRRSFYSDFQYIVGGLAYSLNAIKNGVLRNNRRSPYSLIKPFGSGDKRLEIAVDKVNPLIHFGLCN GTKSSPTVRFFTSQGLEAELRSAAREFFQTSGGIEVDLETRTVHLSRVMKWFGGDFGEEKEIVRWVMSYLDGNKAGLVTHLLSDGGAVHVVYQSYEWALN S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	0	1
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	3.3	0.8123
AT4G34540			NmrA-like negative transcripti...		Lus10040443 [exp]	5.5	0.6744
AT3G48210			unknown protein		Lus10018093 [exp]	8.2	0.7899
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	10.7	0.7843
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	11.6	0.7664
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	11.8	0.7614
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	12.0	0.7312
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	12.6	0.6564
AT5G58160			actin binding (.1)		Lus10007447 [exp]	14.9	0.7632
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	20.1	0.7758

Compare expression of checked genes

Lus10034196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.