Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19830 743 / 0 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G50260 722 / 0 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT5G04220 69 / 5e-12 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G14590 62 / 8e-10 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G61050 61 / 2e-09 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 61 / 3e-09 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G53590 60 / 4e-09 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 53 / 7e-07 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G05330 50 / 4e-06 AGD13 ARF-GAP domain 13 (.1) AT3G07940 49 / 1e-05 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029073 [exp] 1145 / 0 AT3G19830 804 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 76 / 5e-14 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026515 [exp] 76 / 5e-14 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 75 / 7e-14 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10037993 [exp] 74 / 2e-13 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10041396 [exp] 74 / 2e-13 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 72 / 5e-13 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 72 / 1e-12 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 70 / 4e-12 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170300 [exp] 820 / 0 AT3G19830 752 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G085000 [exp] 801 / 0 AT3G19830 787 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 75 / 9e-14 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 72 / 6e-13 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.004G174600 [exp] 72 / 7e-13 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.008G038300 [exp] 71 / 2e-12 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G379800 [exp] 70 / 5e-12 AT1G53590 833 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 69 / 7e-12 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 69 / 8e-12 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 68 / 1e-11 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10034197 pacid=23176048 polypeptide=Lus10034197 locus=Lus10034197.g ID=Lus10034197.BGIv1.0 annot-version=v1.0 ATGATTCTGCTGTCTTCTCCTCCGGCTTTCGACTTCACCTCCTCGCTGGTTCTTCTCCCTCAGCTATGTCCGTGTAGGAATCCGCCACAAGCAGCTGGCC ATCTATGTAAGAGGAGGAGGACGAGGCGAGTGAGCTTCAGGCGGGAACTCGGCTCTCGCGCTTGTGCTGTCCCTACCACCGATAGTTACAGTTACAGCAA CGTCAATGTAGATGAGCTAGCTAGCTCCGCGAGACGAGGTGCTAAGAGCATCATTCTTAACCGGATTTCCAACGAGCTGGTGGAGGATGAGAATCTGGGG GAGGATGAAGCTTCGTGTTCTACGAAGGAAATGGGATCCAATTTCACGGGGTTTCAACAGGATCCGATGGTGGATAAGTTGAGGACTCAGTTGGGGGTTA TTCATCCTATCCCGTCGCCTCCCATTAATAGAAACATAGCCGGGTTGTTTGTGTTCTTCTTCTTCGTGGGTGTCATTTTTGATAAGTTGTGGACTGCTAG GAGGAGGAAAACTGGGAATGATGATAGCCAGCTTGGGGCGTGGCCGCAAGTACCTACGAGTTTTTCCTTGTTCTTGGAGAAGGATTTGCAGAGAAAGGAA TCGGTGGAGTGGGTGAACATGGTGTTGGGTAAGTTGTGGAAGGTGTACAGAGGTGGACTTGAGAATTGGCTGATGGGATTGTTGCAGCCGGTCATTGATG ATTTGAAGAAGCCTGATTATGTCGATAGGGTTGAGATTAAGCAGTTCTCCTTGGGGGATGAACCACTGTCTGTCAGGAATGTGGAGCGTAGGACCTCTCG CAGGGCGAATGATTTGCAGTACCAAATTGGCATCCGATATACCGGAGGTGCTCGGATGCTTCTGATGCTTACATTAAAATTTAGTGTTATCCCGATTATG GTGCCAGTGGGCATTCGTGACTTTGACATTGATGGTGAACTGTGGGTCAAATTAAGGTTGATACCAACAGAACCTTGGGTTGGAGCAGTTTCTTGGGCTT TTGTCTCACTCCCGAAGATCAAGTTTGAATTGTCTCCTTTCCGCTTATTCAACTTAATGGATACTGATACATGCTTCTTCTGTTGTCTTTGTTTGTGCAT GGTTCCTGCAACATCAGCTATTCCCGTTCTCTCTAGATTTTTGACAAAACTTCTCACCGTGGACTTGCCTCGACTATTTGTTCGACCAAAGAAGATCGTT CTGGATTTTCAAAAGGGAAAATCAGTAGGCCCTGTGGCGGACGGTCTACAAGCTGGAGAAACGCAAGAAAAAAACAAGGATTTTGTTGGTGAATTATCAG TCACTGTCGTGGATGCTCGGAAACTTTCTTACCTTCTCTATGGTAAAACTGATCCATATGTTGTTTTAAGTCTTGGCGATCAAACTATACGTAGTAAAAA GAACAGTCAGACGACAGTAATTGGACCTCCTGGTGAACCAATCTGGAACCAGGATTTTCATATGCTTGTTTCGAACCCTAGGAGTCAAAAGCTGTTTGTC CAAGTCAAAGACGCTCTCGGATTCAGAGACTTGACCATCGGTAGTGCAGAGGTTGACTTGGTGTCCCTGAAAGATACTGTACCAACAGATAGGATCGTGG TCCTACAAGGAGGTTGGAGCCTCTTCGGGAACAAGTCGTCCGGAGAATTGTTGCTTCGCTTAACATACAAAGCCTACGTCGAGGATGAAGAAGACGACAA AACCGAGTTGGAATCTGTCTACACCGACATGTCAGACGACGAGGCAGAATCCGACGAACCAGATGCAATCTTCGAGCCTAACGGAAACAATTCGTCAACC GGACCCGACAAAGAATCCTTCATGGACGTTCTTGCTGCTCTGATAGTCAGCGAGGAATTTCAAGGGATCGTAGCATCGGAGACCGGATATAACAGAGTTC CGGATGAGGCGTCCAGTTCCGGCCCAACAACGCTTCCAAGACCCTCGGGTACCGGTGGTGAATCTGGACCGTACAATTCCAGCCAAAGTTCTGAAGGTTC ACGATCTGTATTGCTGGGTCTTGCTGCCATTACGAGCATATTGGTGCTGATTACTCTGAGTAGCAGCGGTTCAAGTCTGTTCAACCCTTGA
AA sequence Show only first row Show all	>Lus10034197 pacid=23176048 polypeptide=Lus10034197 locus=Lus10034197.g ID=Lus10034197.BGIv1.0 annot-version=v1.0 MILLSSPPAFDFTSSLVLLPQLCPCRNPPQAAGHLCKRRRTRRVSFRRELGSRACAVPTTDSYSYSNVNVDELASSARRGAKSIILNRISNELVEDENLG EDEASCSTKEMGSNFTGFQQDPMVDKLRTQLGVIHPIPSPPINRNIAGLFVFFFFVGVIFDKLWTARRRKTGNDDSQLGAWPQVPTSFSLFLEKDLQRKE SVEWVNMVLGKLWKVYRGGLENWLMGLLQPVIDDLKKPDYVDRVEIKQFSLGDEPLSVRNVERRTSRRANDLQYQIGIRYTGGARMLLMLTLKFSVIPIM VPVGIRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMDTDTCFFCCLCLCMVPATSAIPVLSRFLTKLLTVDLPRLFVRPKKIV LDFQKGKSVGPVADGLQAGETQEKNKDFVGELSVTVVDARKLSYLLYGKTDPYVVLSLGDQTIRSKKNSQTTVIGPPGEPIWNQDFHMLVSNPRSQKLFV QVKDALGFRDLTIGSAEVDLVSLKDTVPTDRIVVLQGGWSLFGNKSSGELLLRLTYKAYVEDEEDDKTELESVYTDMSDDEAESDEPDAIFEPNGNNSST GPDKESFMDVLAALIVSEEFQGIVASETGYNRVPDEASSSGPTTLPRPSGTGGESGPYNSSQSSEGSRSVLLGLAAITSILVLITLSSSGSSLFNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10034197 [exp]	0	1
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10031657 [exp]	2.2	0.8499
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	3.9	0.8830
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	4.9	0.8484
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	6.0	0.8750
AT5G58610			PHD finger transcription facto...		Lus10025387 [exp]	9.2	0.8232
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	14.0	0.8401
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	16.1	0.8660
AT4G29780			unknown protein		Lus10027622 [exp]	20.3	0.8515
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	25.3	0.8366
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	26.8	0.7740

Compare expression of checked genes

Lus10034197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.