Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70710 722 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 692 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G02290 502 / 3e-175 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 491 / 5e-171 ATCEL2 cellulase 2 (.1) AT4G39010 479 / 1e-166 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 441 / 1e-151 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G71380 434 / 6e-149 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 433 / 1e-148 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT1G64390 380 / 3e-126 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G23560 373 / 3e-125 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029071 [exp] 808 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10008208 [exp] 519 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10018077 [exp] 497 / 3e-173 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 493 / 2e-171 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10038223 [exp] 492 / 2e-171 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10027205 [exp] 475 / 6e-165 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10025880 [exp] 472 / 3e-164 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10027201 [exp] 460 / 2e-158 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1) Lus10031090 [exp] 439 / 2e-152 AT4G39010 614 / 0.0 glycosyl hydrolase 9B18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109200 [exp] 750 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 731 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 516 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.004G162200 [exp] 514 / 2e-180 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.002G202400 [exp] 499 / 5e-174 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 498 / 1e-173 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.015G127900 [exp] 484 / 1e-168 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 475 / 6e-165 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.001G083200 [exp] 467 / 7e-162 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.019G069300 [exp] 454 / 1e-156 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10034199 pacid=23175882 polypeptide=Lus10034199 locus=Lus10034199.g ID=Lus10034199.BGIv1.0 annot-version=v1.0 ATGTATACTCTCCGCGCCGCAATCTTCCTCCTCTTCCTCGCCTTCTCCTCCGCCGCCGCCCACGACTACCACGACGCTCTCCGCAAGAACATCCTNNNNN NNNNNNCACCGCCCCGCACCCCCCAGGGCGCCCCCCCCGACAAGCCCCCCCCCGCCCGCCCCCTCAAGTGGCCCCGCAACTCCGCCCTGCGCGACGGCTC CACCGTCGGGAGAGATTTGACCGGAGGATACTACGACGCCGGAGACAACATCAAGTTCGGATTCCCGATGGCGTTCACCACCACGCTCCTCTCCTGGAGC GTGATCGACTTCGGGAAGACAATGGGTCCCGAGCTGAAGAATGCCGTGAAAGCAGTCCGCTGGGCGACGGACTACCTCCTGAAGGTGACGGCGGATCCCG GCGTCGTCTACGTCCAGGTCGGCGATGCCTACTCCGACCACAACTGCTGGGAGAGGCCGGAGGACATGGACACGCTCCGAACCGTCTTCAAAATTGATAG GGCCCACCCCGGATCCGACGTGGCAGGGGAAACCGCCGCTGCTCTTGCCGCTGCCTCCCCCGTTTTTCCGTCCACTGCACCTTCCCCTCCCGCCCTACTC CGCCGTCCTCCTCAATCGCACAGGGGAGCTTACAGCGGTAGTTTACACGCGGCTGTGTGCCCTTTTTACTGTGACAACAACGGTTACCAGGACGAGTTGC TTTGGGGGGCAGCATGGCTGCACAAGGCGTCGAGGAGGAGGGTTTACAGAGAGTACATTATAAAAAACGAGGTCGTTTTGCACGCCGGAGATACTATTAA TGAGTTCGGTTGGGATAATAAACACGCTGGCATTAACGTTCTACTTTCCAAGGAAGTGTTGATGGGAAGAGCAGACTATTTCGAGAATTTCAAGCAGAAT GCTGACGGGTTTATCTGTTCTTTATTGCCTGGAATCTCTCATCCTCAAGTCCAATATTCTCCAGGAGGGCTGATATTCAAGGCTGGAGGTAGCAACATGC AGCATGTAACTTCAATATCGTTCCTGCTTCTGGCTTACTCCAATTACCTCAGCCATGCCAACAAGGCTGTCCCATGCGGCTCCCACTCTGCTTCCCCTGC TCTCCTCCGTCAGTTAGCCAAGCGTCAGGTGGATTACATACTTGGAGACAACCCACTGAGGATGTCCTACATGGTAGGCTACGGTGAGCGTTACCCGCAG AGGATCCACCACAGGGGAAGCTCGTTACCGTCAGTCAAAGCCCACCCGGCCAAGATCCAATGCAAAGAGGGCTCACAATACTTCCTCAGCCCGAATCCGA ACCCGAACCTGCTGGTCGGAGCTGTCGTCGGCGGGCCCAATGTTACGGATGCTTTCCCGGATTCAAGGCCCTTCTTCCAGGAGTCCGAGCCCACAACCTA CATCAACGCTCCTTTGGTGGGCCTGCTCTCTTACTTTACGGCCCATTCTTGA
AA sequence Show only first row Show all	>Lus10034199 pacid=23175882 polypeptide=Lus10034199 locus=Lus10034199.g ID=Lus10034199.BGIv1.0 annot-version=v1.0 MYTLRAAIFLLFLAFSSAAAHDYHDALRKNIXXXXXPPRTPQGAPPDKPPPARPLKWPRNSALRDGSTVGRDLTGGYYDAGDNIKFGFPMAFTTTLLSWS VIDFGKTMGPELKNAVKAVRWATDYLLKVTADPGVVYVQVGDAYSDHNCWERPEDMDTLRTVFKIDRAHPGSDVAGETAAALAAASPVFPSTAPSPPALL RRPPQSHRGAYSGSLHAAVCPFYCDNNGYQDELLWGAAWLHKASRRRVYREYIIKNEVVLHAGDTINEFGWDNKHAGINVLLSKEVLMGRADYFENFKQN ADGFICSLLPGISHPQVQYSPGGLIFKAGGSNMQHVTSISFLLLAYSNYLSHANKAVPCGSHSASPALLRQLAKRQVDYILGDNPLRMSYMVGYGERYPQ RIHHRGSSLPSVKAHPAKIQCKEGSQYFLSPNPNPNLLVGAVVGGPNVTDAFPDSRPFFQESEPTTYINAPLVGLLSYFTAHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	0	1
AT1G19990			unknown protein		Lus10033141 [exp]	3.5	0.9304
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	3.7	0.9125
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	3.9	0.9364
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10021823 [exp]	4.2	0.9133
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	5.2	0.9235
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	5.5	0.9066
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10016448 [exp]	7.7	0.9139
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	9.2	0.9221
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	12.3	0.9121
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	13.3	0.8845

Compare expression of checked genes

Lus10034199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.