Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19850 374 / 2e-123 Phototropic-responsive NPH3 family protein (.1) AT1G50280 341 / 4e-111 Phototropic-responsive NPH3 family protein (.1) AT3G22104 193 / 8e-55 Phototropic-responsive NPH3 family protein (.1) AT1G30440 179 / 6e-49 Phototropic-responsive NPH3 family protein (.1) AT5G03250 178 / 1e-48 Phototropic-responsive NPH3 family protein (.1) AT5G48800 176 / 9e-48 Phototropic-responsive NPH3 family protein (.1) AT2G14820 170 / 1e-45 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G13600 167 / 8e-45 Phototropic-responsive NPH3 family protein (.1) AT1G03010 166 / 2e-44 Phototropic-responsive NPH3 family protein (.1) AT5G66560 167 / 3e-44 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012901 [exp] 474 / 3e-161 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 457 / 1e-154 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10029070 [exp] 370 / 3e-125 AT3G19850 174 / 3e-50 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 224 / 3e-66 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10039710 [exp] 220 / 7e-65 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 191 / 4e-53 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 182 / 1e-49 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 181 / 3e-49 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 180 / 5e-49 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170900 [exp] 400 / 4e-133 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 388 / 2e-128 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.007G118800 [exp] 248 / 4e-75 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.017G041600 [exp] 245 / 4e-74 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 190 / 2e-53 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 185 / 4e-51 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 179 / 1e-49 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 178 / 1e-48 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 178 / 2e-48 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 177 / 4e-48 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10034200 pacid=23176117 polypeptide=Lus10034200 locus=Lus10034200.g ID=Lus10034200.BGIv1.0 annot-version=v1.0 ATGATGATGATCCAACCCGACGTCGCAATCCTTGTCAACTCCCAAGAAACCTTCTTCCTCAATCAGAGAATCGTGTGTTCTTACATGGGGATGCTGAGGA ACATCATCCATCAACAAACCCAAATGATCAGGTTTTCACGAATCGAGATCCAAGGCTTCCCTGGCGGCCCGGCGGCTTTCGAGCGAGTCGCCGGATTCTG CTACGGTGGCGGCGGAGGAGTTAAACTCTCTGCCGCCAATGTCTCAATCTTCCACTGCACCGCCGTCTACCTCGGCATGACGGACGCCGTCTCCGCCGGC AACCTCCTCAAACAGACGGAGCATTTCCTCCGCGGGATTCCGAGCTGGTCATTATCGGATGTCGTTTCGAGCCTCGAATCGTGCGACTCTTTCTTCTCCT ACGCCGAATCGTTAGGCCTCGTGGAGAGGCTAATTTCCGGGCTGCTAGCGAAAATTGCCACGTCAGACACCTCATCTGAGTCTTCGTCTTCCACGTCGGC AGATGACATGGCTTGGAACTCAGACTCATCTAGTCCGAGGTCCAAAAGGAGAGTGCTCGGAGTGGAGTGGTGGTTTGATCAACTGGTCAAACTCTCCCCT CGAGCAATGGAAATGTTGATCAAGAAATCTGGACCGCACGGGTCATCGATGACTTGGTTCCTACTCCATTACTTGAAGAACCGGTCCGGGCCAACATCTC GTGATGACCGGTCAACTTACTCTAGTCTGGCTGACACGGCCATACAAGGACTGACATCATCAATGATGCCACTCTCTTATAGAACCCTGATGTGGGTTCT CAGGATTGTGTCGGGGTTCAACCCGACGAAAGGTTCGAAACATAAGCTCGAGAGGATGATTGGGGAGTTGCTCAATCAAGCCAGCCTGGACGATCTGCTG GTGACCGGCACCTGCAATGGCGATGGTCGGAGCTGTGTTTACGATGTCGATTTGGTTATAAGATTGGTGAGGGAGTTTGCTAGTCATCATGGTACTGATC AAGTTAGTCAGAAGATGAAGGGAGTTGTGAGGTTGATTGATGAGTACTTAAGGGAGATATCTCCTGATCATAACTTGAAGATGGCTAAGTTCATGGAGGT TGCTGAGAGCTTGCCAATGGCTGCTAGGGAGAGCTTTGATGGAGTTTACAGAGCCATTGACATCTACCTTGAGACACATCGCAATCTTACCATGGAGGAG AGATCAAAACTGTGTGAATGTCTCAACTTCGACAAATTATCAATGGAGGCATGTAAAGAGATGGCCAAGAACCCGAAAATCCCACCGACTGTTTCGGTTC AAGCCCTCATGTCTAAGAGATTTGCAGTCCCCAATTCAACAGGTCGGGAGCCATCATCAACTTCAAGCAGGGTGAAAGTAGTGAAAGGTGATCACGTGCA TGGATACTCGTGTAATCCTGCTACGAAAGGGACGATAAATCAATCATGTAACGAATTGGATATGGGTACTGAGATGGAGATGAACGTGGCGAGGATGCAA AAGAGGGTTGTGGAGTTGGAGAGAAGTTGTAGGAAATTGAAGAAGGAAATGTCTAGGATGGGCAAGCATCATCATGGTGATGGTGGTGGTGGTGGTGGTC TTAATAAGCTTATGTCACTCCCTTCTTCTTTTGGGAAAAACATAGGTTGGATTTGTTATTAG
AA sequence Show only first row Show all	>Lus10034200 pacid=23176117 polypeptide=Lus10034200 locus=Lus10034200.g ID=Lus10034200.BGIv1.0 annot-version=v1.0 MMMIQPDVAILVNSQETFFLNQRIVCSYMGMLRNIIHQQTQMIRFSRIEIQGFPGGPAAFERVAGFCYGGGGGVKLSAANVSIFHCTAVYLGMTDAVSAG NLLKQTEHFLRGIPSWSLSDVVSSLESCDSFFSYAESLGLVERLISGLLAKIATSDTSSESSSSTSADDMAWNSDSSSPRSKRRVLGVEWWFDQLVKLSP RAMEMLIKKSGPHGSSMTWFLLHYLKNRSGPTSRDDRSTYSSLADTAIQGLTSSMMPLSYRTLMWVLRIVSGFNPTKGSKHKLERMIGELLNQASLDDLL VTGTCNGDGRSCVYDVDLVIRLVREFASHHGTDQVSQKMKGVVRLIDEYLREISPDHNLKMAKFMEVAESLPMAARESFDGVYRAIDIYLETHRNLTMEE RSKLCECLNFDKLSMEACKEMAKNPKIPPTVSVQALMSKRFAVPNSTGREPSSTSSRVKVVKGDHVHGYSCNPATKGTINQSCNELDMGTEMEMNVARMQ KRVVELERSCRKLKKEMSRMGKHHHGDGGGGGGLNKLMSLPSSFGKNIGWICY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10034200 [exp]	0	1
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	15.8	0.8329
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	18.4	0.8287
AT1G11655			unknown protein		Lus10001141 [exp]	25.2	0.8248
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	27.8	0.7488
AT1G27385			unknown protein		Lus10015781 [exp]	35.2	0.8174
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	45.1	0.8200
AT5G57770			Plant protein of unknown funct...		Lus10015501 [exp]	64.0	0.8064
AT5G53420			CCT motif family protein (.1.2...		Lus10014919 [exp]	71.9	0.7861
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	78.9	0.7432
AT1G09740			Adenine nucleotide alpha hydro...		Lus10009272 [exp]	79.7	0.7559

Compare expression of checked genes

Lus10034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.