Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19895 662 / 0 RING/U-box superfamily protein (.1) AT3G12940 151 / 1e-39 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05230 140 / 9e-37 RING/U-box superfamily protein (.1) AT2G40640 132 / 2e-33 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000199 [exp] 492 / 1e-173 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1) Lus10029068 [exp] 323 / 2e-108 AT3G19895 164 / 7e-48 RING/U-box superfamily protein (.1) Lus10002543 [exp] 140 / 8e-36 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034237 [exp] 137 / 5e-35 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1) Lus10029029 [exp] 131 / 4e-33 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1) Lus10027382 [exp] 74 / 1e-13 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085700 [exp] 766 / 0 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 743 / 0 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1) Potri.019G058300 [exp] 157 / 4e-42 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1) Potri.011G143000 [exp] 153 / 3e-40 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034201 pacid=23175910 polypeptide=Lus10034201 locus=Lus10034201.g ID=Lus10034201.BGIv1.0 annot-version=v1.0 ATGCAACACCACCACCCCCACCCCCATCACCAGCAGCAGCAGCAGCAGCCGCCGCCGAATTCATCATCAGCAGCATCATCACCCGCTCTTAAACCCTCTA CACAGAAGTCCAGCCAATCTCCGTTCACCGTCGCTCCGCTATCCGCTTCTCGCCTCGGACAACATCCGCCATCCACCTCCTCCTCCATCGATCATGTAAT CTTGCAGGCAGCTCACCAGTCCGGGGAGCAGGCACTGATGCTGGCGAAGGTCAGGCTGTCGGATATAACACCCTACGATGGGGCGCCATGTGGGCCATTC GTGAAGGCTGTTGAGGCGTTATCCGGTTCTCTGATGAGGCATAACGCTGCTGTAATCGAGTTAGGGAAAGAGGATGCTGTGCTGATGAAATGCGGCCTAG AAGCTTCACGTTTGTACTTTAGGTGTCATGGTAAAGGAAGCAGCGGTCGTGGAGTTCATATGTACAGAGCCAAGTCTCACGAAGAATGGGATTCAGCTCC ACCTTGCATGGCTGAAATATTTACGTGCATGGGGAAGGTAGCTCGGGCTGCTTTGTGCGCTATAGCAAGACATCTTCGTTTGAGAAGCGATGCCTTCAAC CATTTACTGGATGATACCCCATTGCCTGTGAATGAGGTGTCCTCATCTGTGCTAGTTGCCTCTTATTCTCAGACATCGTTGCCAAATGGGAAAATGGCTA TTGGAGGAGGAGCAAAATCTTCTGTTAACAGTGAAGTTGAGAAAGGGCTGATAACGTTGATTTCGTCGGACAGTCCCGGGCTTGAGGTTTGTGACCCTAA CGGCCGCTGGTACCTAGCTGATCGTGGCTTTGCTCCAGGTGTTATTTTGTTGATTACTGGCAAGGCACTTAGCCAAGCCACAGCTGGCCTTCGTCCTGCT TCTTCATATAGAACTGCTTCTGATCAGTCATCTTCCATGAATGGCAGTGGAAGGACATCGTTGGCATTTCGACTGATGCCCCAGGCAAATGCTGTATTGG ATTGTTCTCCTATTGCAGCAGCTGGCCATGTCATTCCTCAGAGCTATGTCCCTGTATCTGTTAGTCAATTTATGGATCACCTTTCTACTGATGACGTTGT TATGTCTGATCTGCCTGAGAATGACAATGTTGTTCTCAATAGTTCTAACAAGGAGCCGTCATTGAGAAGTATCCTCTCAGATCCGTTATCGGGGGCATTT CTTGAAGATGCAATGTACGCCTCTTGTGGACATTCATTCGGCGGTCTTATGCTCAGTAGAGTCCTCGAATTGTCAAGGTGTACCCTCTGCAATGCGCAAG TGGAATCCGGGTCTTTGATTCCTAATCTAGGTCTTAGAGCTGCAGCTTCAGCTGTGAAACTTGATGATGACCGGAGGCTATTCCATAATTCATCTCTAAG AAAGCGTCGCAAGGACATTGGTGATCAACCAGATTCGATTAGAAGACAGCACAGGGAGAATGGAGCTGTCGGTGCAGAAGACGGACCCATTCGAGTGTTA CAGTATCCTTTCGCAGTGAACGAGAAAGTAGTGATAAAGGGAAACATGAGAACGCCAGAGAAATTCGTGGGGAAGGAAGCAATTATCACATCACAGTGTC TCAATGGCTGGTACTTGCTCAAGATCATCGGTAGCGGAGAAGATGTCAGGCTCCAGTATCGCTCACTTCGGAAGACTTCAAGCTCCGGAACAAGCGAAGA GAGGTCTGCTTCACAGTCTGCTCGGAACGGAAGCTCGTAG
AA sequence Show only first row Show all	>Lus10034201 pacid=23175910 polypeptide=Lus10034201 locus=Lus10034201.g ID=Lus10034201.BGIv1.0 annot-version=v1.0 MQHHHPHPHHQQQQQQPPPNSSSAASSPALKPSTQKSSQSPFTVAPLSASRLGQHPPSTSSSIDHVILQAAHQSGEQALMLAKVRLSDITPYDGAPCGPF VKAVEALSGSLMRHNAAVIELGKEDAVLMKCGLEASRLYFRCHGKGSSGRGVHMYRAKSHEEWDSAPPCMAEIFTCMGKVARAALCAIARHLRLRSDAFN HLLDDTPLPVNEVSSSVLVASYSQTSLPNGKMAIGGGAKSSVNSEVEKGLITLISSDSPGLEVCDPNGRWYLADRGFAPGVILLITGKALSQATAGLRPA SSYRTASDQSSSMNGSGRTSLAFRLMPQANAVLDCSPIAAAGHVIPQSYVPVSVSQFMDHLSTDDVVMSDLPENDNVVLNSSNKEPSLRSILSDPLSGAF LEDAMYASCGHSFGGLMLSRVLELSRCTLCNAQVESGSLIPNLGLRAAASAVKLDDDRRLFHNSSLRKRRKDIGDQPDSIRRQHRENGAVGAEDGPIRVL QYPFAVNEKVVIKGNMRTPEKFVGKEAIITSQCLNGWYLLKIIGSGEDVRLQYRSLRKTSSSGTSEERSASQSARNGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	0	1
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10030555 [exp]	3.2	0.8258
AT2G25670			unknown protein		Lus10033084 [exp]	3.2	0.8291
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	6.5	0.8109
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10000697 [exp]	19.1	0.7478
AT2G33320			Calcium-dependent lipid-bindin...		Lus10032780 [exp]	20.2	0.7983
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	20.5	0.7551
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	21.8	0.7936
AT5G45030			Trypsin family protein (.1.2)		Lus10031785 [exp]	27.1	0.7734
					Lus10027487 [exp]	27.4	0.6930
AT2G42910			Phosphoribosyltransferase fami...		Lus10031395 [exp]	28.4	0.7645

Compare expression of checked genes

Lus10034201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.