Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27640 1604 / 0 ARM repeat superfamily protein (.1) AT5G19820 296 / 4e-84 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT2G16950 64 / 4e-10 ATTRN1 transportin 1 (.1.2) AT1G26170 52 / 3e-06 ARM repeat superfamily protein (.1) AT2G16960 50 / 5e-06 ARM repeat superfamily protein (.1.2) AT1G64790 46 / 0.0002 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029067 [exp] 1993 / 0 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10013763 [exp] 186 / 2e-48 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 186 / 5e-48 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10025083 [exp] 47 / 7e-05 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 46 / 0.0002 AT2G16950 1380 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085800 [exp] 1737 / 0 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 1725 / 0 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 287 / 3e-81 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 283 / 9e-80 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 282 / 2e-79 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 113 / 4e-25 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 92 / 8e-19 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.T108626 [exp] 52 / 3e-06 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 52 / 3e-06 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 44 / 0.0005 AT2G16950 1316 / 0.0 transportin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10034202 pacid=23175990 polypeptide=Lus10034202 locus=Lus10034202.g ID=Lus10034202.BGIv1.0 annot-version=v1.0 ATGGCGCAGTCACTCGAGCTCCTCCTAATCCAATTCTTGATGCCTGACAACGACGCTCGGATGCAGGCGGAGGAGCAGATAAAGCGGCTTGCCAAGGATC CTCAGGTCGTCCCCGCTCTCGTCCAGCACCTCCGCACCGCCAAAACTCCCGGCGTCCGCCAGCTCGCCGCCGTTCTCCTCCGAAAGAAGATCACCGGTCA TTGGGCCAAGCTTCCTCCCAACCTCAAGCACCTCGTCAAGCAGTCCCTCATTGAGAGCATCACCATGGAGCACAGTCCGCCAGTGAGGAGTGCTAGTGCC CATGTAGTGAGCATCATCGCTAAGTACGCTGTGCCAGCTGGGGAATGGCCTGAGCTGCTGCCGTTTTTGTTCCAATTGAGTCAGAGTGCCCAGGAAGATC ACAGAGAGGTGGCGTTGATCCTTTTCAGTTCCTTGACTGAAACCATTGGGAATGCTTTCCAACCTTATTTTGCGGATCTGCAAGCACTTCTGTTGAAATG TCTACAAGACGAAGCTAGTAGCCGTGTTAGAGTTGCTGCTCTGAAGGCTGTGGGATCATTTCTTGAATTTACAAACGATGGAACTGATGTGGTCAAGTTC AGGCAATTCATTCCTAGCATTTTGAATGTAGCAAGACACTTGCTTGCTTCCGGAGATGAGGATGTTGCTGTGATTGCTTTCGAAATTTTTGATGAGTTGA TTGAATCTCCTGCACCGCTTCTTGGAGATTCTGTTAAATCAATTGTGCAGTTCTCGCTTGAAGTTTGCTCTAGTCAAGATTTGTTGTCCAATACTCGTCA CCAGGCTGTTCAAATTATTTCGTGGCTGGCAAGGTACAAAGCCAATTCCTTGAAAAAGTACAAGCTGGTTATCCCAATTTTGCAAGTGATGTGTCCCTTG CTGGCAGAGTCTACCAACTCTGCTGACGATGATCTTGCCCCAGATAGGGCTGCTGCAGAGGTTATTGACACAATGGCATTGAGCCTTCCAAAGCACGTTT TCCCTGCTATTTTTGAGTTTTCCTCGTTAAGCAGTCAAAATGTCAATCCAAAGTACCGGGAAGCTTCTGTTACAGCATTGGGAATAGTCTCAGAGGGTTG TTTGGATTTGATGATAGATAAGTTGGAACCAGTTCTTCATATCGTCTTGGGTGCTTTGAGGGATCCGGAACAAGTGGTTAGAGGGGCAGCCTCATTTGCA CTGGGTCAATTTGCAGAGCATTTGCAACCTGATATAGTGTCTCACTATCAAAGTGTTCTGCCTTGTATCTTAAATGCTTTAGAGGATGCATCCGATGAAG TAAAGGAAAAATCATATTATGCACTAGCTGCTTTCTGTGAGAACATGGGTGAAGAAATCCTTCCTTTTCTCGATCCATTGATGGTGAAGCTACTTGGAGC ACTGCAAAGCAGTCCTCGTAATTTGCAAGAAACGTGCATGTCTGCAATTGGGTCAGTTGCATCTGCTGCTGAGGTAGCTTTCATTCCATATGCTGAAAGG GTCCTTGAGTTGATGAAATCATTTATGGTACTTACCAATGATGAGGATCTTCGATCACGAGCAAGGGCTACTGAGCTTGTTGGAATAGTAGCAATGTCTG TGGGTAGAGGAAGAATGGAACCAATCTTACCCCCCTTCATGGAAGCTGCTGTTTCGGGTTTTGCGCTTGAATATAGTGAGCTCCGTGAATACAGTCATGG ATTCTTCAGCAATGTTGCTGAGATCATGGATGATGGTTTTGCACAGTACCTTCCCCATGTTGTACCCTTAGCATTTTCGTCATGTAATCTAGACGACGGC TCTGCTGTAGATATTGATGAATCTGATGATGAAAATATCAATGGATTTGGTGGGGTCTCATCTGATGACGAGGCACATGATGAACCTAGAGTTCGAAATA TCAGCATAAGAACAGGAGTGCTGGATGAAAAGGCAGCTGCAACTCAAGCACTTGGCTTATTCGCTCTTCATACAAAGAATGCCTTTGCGCCATATCTGGA GGAGGGTTTCAAGATATTGGTGAAACATTCCGAGTACTTCCATGAGGATTTGCGGCTTCAAGCAGTGATCTCCTTGAAACATATGTTGACAGCAGCACAT GCAATCTTCCAAAATAATAGTGATGGACAAGCGAAGGCAGTAGAGATACTAGATAAAGTGATGAATATTTATATCAAGGCAATGACCGATGATGATGACA AAGAAGTTGTTGCCCAAGCTTGCTTGAGCATAGTCGATATTATTAAGGATTATGGCTACATGGCTGTTGAACCTTATATGCCACAGCTTGTTGATGCAAC ACTGAAGTTGATCAGAGAACAGGCTGCTTGTCAAGTGTCAGAAAATGACAGTGATGCCGAGGATGATGATGACACCTCGCATGATGAAGTTCTTATGGAT GCGGTTTCAGATCTTCTTCCAGCATTTGCAAAGGCCATGGGTCCTCAATTTGCACCTATTTTCGCAAACCTTTTTGAACCTTTGATGAAATTTGCGAAAG CTTCACGTCCTCCGCAAGACCGGACGATGGTGGTTGCTACCCTTGCTGAAGTTGCACAGCACATGGGTGCTCCCATTGGAGGCTACGTTGAGAAGTTGAT GCCTATAGTGCTTAAAGAATTGGCTTCATCAGACCCAACAAACAGGAGGAACGCTGCTTTTTGTGCTGGCGAGCTATGCAAGAATGGAGGGCAATCAGCT CTCAAAGGCAGATTCTATGTTGACGTATTGCATGGACTGTTTCCCTTATTCGGGGAATCTGAACCCGATCTCGCTGTCAGGGATAACGCTGCCGGTGCAG TGGCAAGGATGATAATTACCTATCCTCAGTCTATCCCATTGGATCAGGTTCTTCCGGTTTTCCTCAATGCTCTCCCACTAAAGGAGGACCACGAGGAGTC CATGGCTGTCTATAGTTGTATATCCACTCTGGTTTTCTCATCCAATTCACAGATCATCGCACTCGTGCCCGAATTGGTCAATGTTTTCGCAGAAGTCGTC GTGTCACCTGCAGAAAAGCCCGAAGTGAAAGCTCAAATTGGTCGAACATTCTCCCACCTGCTTTCACTGTATGGTCAGCAAATGCAGCCTCTCTTGAGCA ACCTATCGCCTGCACATGCTAATGCTTTAGCTGCATTCGCTCCCAAAAGCTAA
AA sequence Show only first row Show all	>Lus10034202 pacid=23175990 polypeptide=Lus10034202 locus=Lus10034202.g ID=Lus10034202.BGIv1.0 annot-version=v1.0 MAQSLELLLIQFLMPDNDARMQAEEQIKRLAKDPQVVPALVQHLRTAKTPGVRQLAAVLLRKKITGHWAKLPPNLKHLVKQSLIESITMEHSPPVRSASA HVVSIIAKYAVPAGEWPELLPFLFQLSQSAQEDHREVALILFSSLTETIGNAFQPYFADLQALLLKCLQDEASSRVRVAALKAVGSFLEFTNDGTDVVKF RQFIPSILNVARHLLASGDEDVAVIAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSSQDLLSNTRHQAVQIISWLARYKANSLKKYKLVIPILQVMCPL LAESTNSADDDLAPDRAAAEVIDTMALSLPKHVFPAIFEFSSLSSQNVNPKYREASVTALGIVSEGCLDLMIDKLEPVLHIVLGALRDPEQVVRGAASFA LGQFAEHLQPDIVSHYQSVLPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMVKLLGALQSSPRNLQETCMSAIGSVASAAEVAFIPYAER VLELMKSFMVLTNDEDLRSRARATELVGIVAMSVGRGRMEPILPPFMEAAVSGFALEYSELREYSHGFFSNVAEIMDDGFAQYLPHVVPLAFSSCNLDDG SAVDIDESDDENINGFGGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFALHTKNAFAPYLEEGFKILVKHSEYFHEDLRLQAVISLKHMLTAAH AIFQNNSDGQAKAVEILDKVMNIYIKAMTDDDDKEVVAQACLSIVDIIKDYGYMAVEPYMPQLVDATLKLIREQAACQVSENDSDAEDDDDTSHDEVLMD AVSDLLPAFAKAMGPQFAPIFANLFEPLMKFAKASRPPQDRTMVVATLAEVAQHMGAPIGGYVEKLMPIVLKELASSDPTNRRNAAFCAGELCKNGGQSA LKGRFYVDVLHGLFPLFGESEPDLAVRDNAAGAVARMIITYPQSIPLDQVLPVFLNALPLKEDHEESMAVYSCISTLVFSSNSQIIALVPELVNVFAEVV VSPAEKPEVKAQIGRTFSHLLSLYGQQMQPLLSNLSPAHANALAAFAPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27640			ARM repeat superfamily protein...		Lus10034202 [exp]	0	1
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	9.3	0.8790
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	11.4	0.8540
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	12.2	0.8617
AT2G43410		FPA	RNA binding (.1.2.3.4)		Lus10019359 [exp]	15.0	0.8199
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	17.0	0.8421
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026727 [exp]	18.3	0.8041
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	19.5	0.8459
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	20.2	0.8070
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	32.4	0.8494
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	34.5	0.8337

Compare expression of checked genes

Lus10034202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.