Plant FIBer expression Database

Lus10034203 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19900 230 / 2e-76 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029066
[exp]
370 / 7e-132 AT3G19900 246 / 9e-83 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G169700
[exp]
256 / 8e-87 AT3G19900 243 / 2e-81 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11267 DUF3067 Domain of unknown function (DUF3067)
Representative CDS sequence
>Lus10034203 pacid=23176079 polypeptide=Lus10034203 locus=Lus10034203.g ID=Lus10034203.BGIv1.0 annot-version=v1.0
ATGTCGAGCTTCGTGTCATCGAGCCACCGTAGCTACTGGTCAGTAGGAGGAAGAGGAATACGGAATCAGGAGCAACAGATTCCGGATATCAGAAGAAGAT
TCAGCAATTGCATTAAACTTCCATTCCCCGCCGGAGATCATCACTATCATCATTTTGGTTCGCCTGGCAGAAGGTTGTCATCGAAAAGATGCAGGCCTGT
ATTTGCGACTGTGGTAGGTAGTGGTGGTGATGACGATGAGGATGATCCAGATGATGGTAAAGATGGGAAGAAGAATGATGCTAATTTGAAAAGGGAAGGC
GAAACGGGTGGCAGTGATGCAGTTAGAGACAATCTTGAGAGAATTGTGGGGAGAGACGACTCGAAATTCAGCGGGATAGACCTCGCAACGCTGATCAGGA
ACAAGTACGGAAGGTCTTATGATGTTCAACTCATAAAGAAGGAGTTCATGGGGAAGAACTTCCTCGCCATGAACGTAATGTGGAAGTATACCGAGCAGAG
ATCGTTTCCGCTGACGGAGGAGGAGTATCTGTTGAGGCTGGACGATGTGGCCAACACATTGAAGTGTTGGGGAGCAGTCTCGCACATCCGAGACAGCTTA
CAGAAGTTGAAGGAGCGGCCCCGCATAGGCAAGGCAGTTAGCATTTTCATAGACATGGACGAGACAGGCGGCCGTGCAAACGAATGGATTTACAAGTAG
AA sequence
>Lus10034203 pacid=23176079 polypeptide=Lus10034203 locus=Lus10034203.g ID=Lus10034203.BGIv1.0 annot-version=v1.0
MSSFVSSSHRSYWSVGGRGIRNQEQQIPDIRRRFSNCIKLPFPAGDHHYHHFGSPGRRLSSKRCRPVFATVVGSGGDDDEDDPDDGKDGKKNDANLKREG
ETGGSDAVRDNLERIVGRDDSKFSGIDLATLIRNKYGRSYDVQLIKKEFMGKNFLAMNVMWKYTEQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRDSL
QKLKERPRIGKAVSIFIDMDETGGRANEWIYK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19900 unknown protein Lus10034203
[exp]
0 1
AT3G19900 unknown protein Lus10029066
[exp]
1.0 0.9277
AT5G67030 NPQ2, LOS6, IBS... NON-PHOTOCHEMICAL QUENCHING 2,... Lus10009359
[exp]
3.2 0.9204
AT4G22260 IM1, IM IMMUTANS, Alternative oxidase ... Lus10037518
[exp]
7.5 0.8724
AT2G42975 unknown protein Lus10020756
[exp]
7.7 0.8470
AT4G03410 Peroxisomal membrane 22 kDa (M... Lus10039800
[exp]
7.7 0.9018
AT2G37240 Thioredoxin superfamily protei... Lus10014017
[exp]
9.2 0.9174
AT4G03410 Peroxisomal membrane 22 kDa (M... Lus10018568
[exp]
9.5 0.8956
AT3G11670 DGD1 DIGALACTOSYL DIACYLGLYCEROL DE... Lus10021273
[exp]
11.0 0.8714
AT2G38185 RING/U-box superfamily protein... Lus10004813
[exp]
11.1 0.8603
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10004703
[exp]
12.2 0.8522

Lus10034203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.