Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 330 / 3e-112 Peroxidase superfamily protein (.1) AT5G58400 308 / 1e-103 Peroxidase superfamily protein (.1) AT5G58390 300 / 1e-100 Peroxidase superfamily protein (.1) AT5G06720 293 / 1e-97 ATPA2 peroxidase 2 (.1) AT2G18140 290 / 2e-96 Peroxidase superfamily protein (.1) AT4G36430 289 / 4e-96 Peroxidase superfamily protein (.1) AT5G06730 282 / 4e-93 Peroxidase superfamily protein (.1) AT2G18150 281 / 5e-93 Peroxidase superfamily protein (.1) AT5G66390 278 / 6e-92 Peroxidase superfamily protein (.1) AT1G44970 278 / 8e-92 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029065 [exp] 605 / 0 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1) Lus10034207 [exp] 338 / 2e-115 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009936 [exp] 328 / 1e-111 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10032786 [exp] 314 / 4e-106 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10030145 [exp] 313 / 2e-105 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10009935 [exp] 311 / 6e-105 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10008581 [exp] 310 / 9e-105 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10003573 [exp] 305 / 7e-103 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10006534 [exp] 305 / 2e-102 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083600 [exp] 347 / 6e-119 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 335 / 2e-114 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 328 / 9e-112 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 329 / 2e-111 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 322 / 3e-109 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 319 / 3e-108 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.013G156800 [exp] 318 / 6e-108 AT5G05340 345 / 7e-119 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 318 / 2e-107 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 308 / 6e-104 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 308 / 6e-104 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10034204 pacid=23175880 polypeptide=Lus10034204 locus=Lus10034204.g ID=Lus10034204.BGIv1.0 annot-version=v1.0 ATGGCTCCTTGCACCACTTTCTGCTTAATTCTATCACTTGCTGCTGTTGGTTATGCAGCTTCCAGTGAAAGCCTGTCACCAGAATATTACGTGAAAACCT GCCCTGAAGCACGGGCCATAGTCAAAGCAGTAGTTGTGGCAGCTCTGAAGAACGAGACTCGAATGGGGGCATCCCTCCTTCGCCTGCATTTCCACGACTG CTTTGTTAACGGATGTGATGCATCGATTCTGCTCGATGACAACACAACTTTCGTCGGGGAGAAAACTGCATCCCCCAACATCAACTCCACCAGAGGGTAT GAAGTTATAGACAAGATCAAAGCTCAAGTGGAAGAAGCCTGCCCTGGAGTTGTGTCTTGTGCTGATATACTTGCCTTGGCTGCCATGGACTCTGTGGTTT ATCTAGGAGGACCTTGGTGGGAAGTTGGATTGGGAAGAAGGGACTCCAACACTGCAAGCAAAGAAGCTGCTGAAGTATCCTTACCTCAACCAACATTCAA TCTGAGTGATTTAGCTGCAAACTTTTGGGCACACGGCCTTTCTTTCCGGGACCTGGTTGCACTTTCAGGTGCACACACAATAGGGAAGGCGAGATGCACA ACATTTCGAGACCACATCTATAACGACACGGACATCGACCCAACATTCGCAAAATGGCTGCGGAAGATCTGCCCTCCAATTGGACACGATGACGTCCTCA CACCTCTCGACTATCGAACTCCGCTCCGTTTCGACAATTCCTACTACGTCAACTTGGTCAACGAGAGAGGTCTCCTCCACTCGGACCAGGACCTGTACGA TTGCAATGATGATGATTCCCCGGCCCGTTCTCTTGCCAGAACTCTGTACGAAACTCGACCTTCAGGGTTGTTCAATGACTTGTTCAACAAGATAGCCAAG ATCAGGCTGTTCACCGAAAACCACGCTGCTTCGATTGTTCGAAACTACGTCGATCATCCTACGGTGTTTTTCGAGGATTTCAGTAAGGGGATGATCAAAA TGGGGGAGATTATGCCTCTCACCGGAGATGCAGGAGAGATCAGGAAGAACTGCCGAAAAGCCAACTGA
AA sequence Show only first row Show all	>Lus10034204 pacid=23175880 polypeptide=Lus10034204 locus=Lus10034204.g ID=Lus10034204.BGIv1.0 annot-version=v1.0 MAPCTTFCLILSLAAVGYAASSESLSPEYYVKTCPEARAIVKAVVVAALKNETRMGASLLRLHFHDCFVNGCDASILLDDNTTFVGEKTASPNINSTRGY EVIDKIKAQVEEACPGVVSCADILALAAMDSVVYLGGPWWEVGLGRRDSNTASKEAAEVSLPQPTFNLSDLAANFWAHGLSFRDLVALSGAHTIGKARCT TFRDHIYNDTDIDPTFAKWLRKICPPIGHDDVLTPLDYRTPLRFDNSYYVNLVNERGLLHSDQDLYDCNDDDSPARSLARTLYETRPSGLFNDLFNKIAK IRLFTENHAASIVRNYVDHPTVFFEDFSKGMIKMGEIMPLTGDAGEIRKNCRKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10034204 [exp]	0	1
AT2G24960			unknown protein		Lus10026250 [exp]	9.4	0.8147
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	11.4	0.7956
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	11.7	0.7964
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	13.3	0.8242
AT5G40600		EMB1875	unknown protein		Lus10003647 [exp]	13.6	0.8053
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	16.6	0.8100
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	18.4	0.7735
					Lus10017572 [exp]	19.1	0.8003
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	21.8	0.7844
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10034219 [exp]	37.1	0.7773

Compare expression of checked genes

Lus10034204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.