Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48730 749 / 0 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 736 / 0 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G46180 102 / 4e-23 DELTA-OAT ornithine-delta-aminotransferase (.1) AT1G80600 92 / 9e-20 WIN1 HOPW1-1-interacting 1 (.1) AT4G39660 83 / 9e-17 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT3G08860 74 / 5e-14 PYD4 PYRIMIDINE 4 (.1) AT2G38400 72 / 4e-13 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G22200 63 / 3e-10 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029064 [exp] 932 / 0 AT3G48730 778 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Lus10030551 [exp] 822 / 0 AT3G48730 764 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Lus10038510 [exp] 105 / 3e-24 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10023299 [exp] 105 / 5e-24 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10008025 [exp] 91 / 3e-19 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 87 / 4e-18 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10025262 [exp] 83 / 7e-17 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10004480 [exp] 76 / 2e-14 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 75 / 3e-14 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101100 [exp] 793 / 0 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.012G103000 [exp] 532 / 0 AT3G48730 530 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.011G082800 [exp] 106 / 1e-24 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.017G053500 [exp] 100 / 2e-22 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 92 / 6e-20 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.016G132200 [exp] 79 / 2e-15 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.016G018500 [exp] 77 / 5e-15 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.006G020900 [exp] 76 / 2e-14 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.007G085600 [exp] 73 / 1e-13 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 71 / 4e-13 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10034205 pacid=23176017 polypeptide=Lus10034205 locus=Lus10034205.g ID=Lus10034205.BGIv1.0 annot-version=v1.0 ATGGCAGCAACATTCTCAGGCGTGGGAATCGGGCTACACCCATCAATCTCTTCTTCGTCCACTCATAAGCTTCCCCGGAGTCAGCAGCAGAAGAGAATCG TCAGGTCGTCGGTGAAAATGGCGGTATCCGTCGAAGAGAACAAGACGAAGAATTTCACCCTCAAAAAATCCGAAGAAGCCTTCAATGCCGCCAAGGAGTT GATGCCAGGAGGTGTGAATTCGCCGGTGCGTGCTTTCAGATCTGTTGGTGGCCAGCCAATCGTGATGGATCGTGTGAAGGGCTCACATATGTGGGATATT GATGGAAATGAGTATATTGACTATGTTGGTTCTTGGGGTCCTGCCATTATTGGCCATGCTGATGATAAGGTGATCGAAGAATTGACACAAGTCATGAAGA AAGGGACTAGCTTTGGTGCACCATGCCTCCTGGAGAACGTCCTGGCCGAGATGGTGATCAAAGCGGTCCCCAGTATCGAAATGGTCCGATTCGTCAATTC GGGAACCGAAGCCTGCATGGGAGCACTCCGCCTCGCCCGTGCATTCACCGGGCGCGAAAAAGTGATCAAGTTCGACGGTTGTTACCACGGACACGCTGAT CCCTTTCTCGTCAAGGCCGGAAGTGGTGTTGCGACCTTAGGCCTCCCCGATTCCCCCGGGGTGCCCAAGGCTGCGACATACGAAACTCTCGTCGCTCCGT ACAATGACATTGCTGCTGTCGAAACCCTCTTCGCTGCTAACAAAGGAGAGATTGCTGCGTTGATACTCGAACCGGTCGTTGGAAACTCCGGTTTCATACC GCCTAAACCTGATTTCCTCGAAGCGATCCGGAGGATTACGGAAGAGAACGGTGCACTACTCATGTTTGACGAAGTCATGACCGGATTCCGCTTATCGTAT GGCGGAGCGCAGGAGTACTTCAACATCACTCCCGACATCACTACGCTTGGGAAGATCATCGGTGGCGGATTGCCAGTTGGCGCCTACGGTGGGCGGAGAG AGATCATGGAGATGGTTGCACCGGCGGGGCCAATGTACCAGGCTGGAACCTTGAGTGGAAATCCTCTGGCAATGACGGCAGGCATCCACACGCTAAACCG GCTGCAGGAGCCCGGTAGCTACGAGCATTTGGACAGGATCACTGGTGAACTCGTTCAGGGCATCCTCGAAGCGGGCAAGAAAGCCGGACACGCAATCTCT GGCGGCCACATCAGGGGAATGTTCGGCTTCTTCTTTGCAGAAGGGCCAGTTTACAACTTCGACGATGCAAAGAAGAGCGACACAGCGAAGTTCGCTAGGT TTTATCAAGGAATGCTGGCGGAAGGCGTGTACTTCGCGCCTTCGCAGTTTGAGGCTGGGTTTACGAGCTTGGCACATACCGATGAGGATATCCGACGCAC TGTCGAGGCTGCTGAGAAGGTCATGAAGCAGATTTAG
AA sequence Show only first row Show all	>Lus10034205 pacid=23176017 polypeptide=Lus10034205 locus=Lus10034205.g ID=Lus10034205.BGIv1.0 annot-version=v1.0 MAATFSGVGIGLHPSISSSSTHKLPRSQQQKRIVRSSVKMAVSVEENKTKNFTLKKSEEAFNAAKELMPGGVNSPVRAFRSVGGQPIVMDRVKGSHMWDI DGNEYIDYVGSWGPAIIGHADDKVIEELTQVMKKGTSFGAPCLLENVLAEMVIKAVPSIEMVRFVNSGTEACMGALRLARAFTGREKVIKFDGCYHGHAD PFLVKAGSGVATLGLPDSPGVPKAATYETLVAPYNDIAAVETLFAANKGEIAALILEPVVGNSGFIPPKPDFLEAIRRITEENGALLMFDEVMTGFRLSY GGAQEYFNITPDITTLGKIIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLNRLQEPGSYEHLDRITGELVQGILEAGKKAGHAIS GGHIRGMFGFFFAEGPVYNFDDAKKSDTAKFARFYQGMLAEGVYFAPSQFEAGFTSLAHTDEDIRRTVEAAEKVMKQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	0	1
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	1.4	0.9733
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	2.0	0.9692
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	3.0	0.9566
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	3.5	0.9556
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	5.0	0.9515
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	5.5	0.9495
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	6.6	0.9331
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	7.3	0.9369
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10028510 [exp]	9.8	0.9199
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	9.9	0.9433

Compare expression of checked genes

Lus10034205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.