Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40460 762 / 0 Major facilitator superfamily protein (.1) AT5G46050 516 / 9e-178 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 506 / 7e-174 Major facilitator superfamily protein (.1) AT3G54140 452 / 5e-153 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 451 / 1e-152 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 449 / 2e-151 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 445 / 4e-150 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G02020 419 / 1e-140 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G37900 417 / 3e-139 Major facilitator superfamily protein (.1) AT3G53960 411 / 1e-136 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029063 [exp] 850 / 0 AT2G40460 589 / 0.0 Major facilitator superfamily protein (.1) Lus10003614 [exp] 548 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 548 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 548 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 546 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 543 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 538 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 480 / 6e-164 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10030947 [exp] 467 / 2e-158 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055800 [exp] 806 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.002G258900 [exp] 570 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 555 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 548 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 546 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G100200 [exp] 469 / 2e-159 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 451 / 2e-152 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 449 / 6e-152 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 449 / 1e-151 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111900 [exp] 444 / 4e-150 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10034206 pacid=23175928 polypeptide=Lus10034206 locus=Lus10034206.g ID=Lus10034206.BGIv1.0 annot-version=v1.0 ATGGAGGCCAAAGGCAACACACAAGATGGCACAGTGGACATCCGAGGCCGACCCATTCTCGCTTCCAAAACGGGCAAATGGAAAGCTTGTGCTTTTCTAC TCGGGTACGAAGCATTCGAGAGGATGTGCTTCTACGGGATAGCATCGAACTTGGTGAACTACTTGACAACCCAACTCCACGAGGACACCGTCTCTTCGGT TAGGAACGTCAACAACTGGTCTGGCGCCGTTTGGATCACTCCGATTCTTGGAGCCTACATTGCCGATACTTACCTGGGCCGGTTCTGGACCTTCACCGTC TCGTCCCTCATTTACGTCCTCGGAATGGTGATGCTAACAATGGCAGCATCCCTAAAATCCATGAAACCAAAATGCATCACACCCTTATGCACCAACCCAT CATCCCATTCACAGATCGTATTCTTCTACCTCTCACTCTACGTAATCGCAGTCGGTTCGGGCGGAACAAAACCCAACATCTCGACCTTTGGGGCGGACCA ATTCGACGAGCTCGACCCGTTGGAGAAGAAGCTCAAGGCTTCCTTCTTCAATTGGTGGATGTTCAGCTCATTCCTCGGCGGACTGGTCGCCAACGTCGGA CTCGTTTACGTCCAGGAGAATCTCGGTTGGGGTTTGGGATACGGCATTCCGACCGTTGGGCTGCTGATGTCTCTGTTTGTGTTTTATATGGGGACTCCGA TTTACAGGCATAAGGCTGTGAATGACGTGGAGAGTCCGGCGAAGCATGTTTGGTCAGTGTTTGTTAAGGCGTTCAGGAATAGGAAGATGTTGCTGCCGGA GGATCCCGATCAGCTTTATGTTGGGAGCGGGAAGCGCCGGGTCATGCATTCCCCTGTTTTCCGGTGCTTAGACAGAGCTGCAATACTCACACCGTCAAAA GAAGGAAATACCAAAACTACCCCGCCGTGCACGGTGACACAGGCGGAGGAAACCAAGCTCGTCCTGGGCATGCTCGTAATATGGTTCGTCACATTAGTCC CCAGCACGTTGTGGGCCCAGATCAACACCTTATTCGTCAAGCAAGGGACAACCTTGGACCGCACCCTCGGTGGCGGCGTAGCCTTCCAGATCCCGGCGGC TTCACTGGGAAGCTTCGTACAGATCTCAATGCTCCTCACTCTCCCTGTCTACGACCGCGTTTTCGTCCCCTTCATGAGGTCCCGGACTGGAAACCCACGT GGCATTTCCTTACTACAGCGGCTAGGCATCGGCTTCCTCATCCAAATCGTTGCCGTCTCTGTCGCTTACGCCGTCGAAGTCAGGAGGATGCACGTCATCA GGTTGACGGTGGATCCCCACTCCGTTATTGGGCAGGGAAGCTACAAACCAAACAGTACGGTACCGATGAGCATATTCTGGCTGCTGCCGCAGTACGTCCT CCTAGGGATCGGCGATGTCTTCAACGCGGTGGGGCTAATGGAGTTCTTCTACGACCAATCTCCGGAACAAATGAGAAGCTTGGGGACGACGTTCTTCACC AGCGGGATTGGTGTAGGCAACTTCCTCAACAGCTTTCTGGTGACGGTGGTCGACAAGGCGACGACGCCGACAGCCGGCGGCGGAGGGAAGCGGTGGATTG GGAACGACTTGAACGACTCCCGTTTGGACTACTACTATGGGTTCCTTTTGGTCCTGTCCACTTTGAATTTGGGGGCTTTTGTTTGGGCTTCTAGTAAGTA TGTTTATAAGAAAGAAGTGGTCTATAGTGTGGATCAAAAGGGTGGTGGGTTGCTGTCGGCGCCGCCGGTGATGGCTGGCGATGAGTGTGAAATGGACGGG AAAGTATAG
AA sequence Show only first row Show all	>Lus10034206 pacid=23175928 polypeptide=Lus10034206 locus=Lus10034206.g ID=Lus10034206.BGIv1.0 annot-version=v1.0 MEAKGNTQDGTVDIRGRPILASKTGKWKACAFLLGYEAFERMCFYGIASNLVNYLTTQLHEDTVSSVRNVNNWSGAVWITPILGAYIADTYLGRFWTFTV SSLIYVLGMVMLTMAASLKSMKPKCITPLCTNPSSHSQIVFFYLSLYVIAVGSGGTKPNISTFGADQFDELDPLEKKLKASFFNWWMFSSFLGGLVANVG LVYVQENLGWGLGYGIPTVGLLMSLFVFYMGTPIYRHKAVNDVESPAKHVWSVFVKAFRNRKMLLPEDPDQLYVGSGKRRVMHSPVFRCLDRAAILTPSK EGNTKTTPPCTVTQAEETKLVLGMLVIWFVTLVPSTLWAQINTLFVKQGTTLDRTLGGGVAFQIPAASLGSFVQISMLLTLPVYDRVFVPFMRSRTGNPR GISLLQRLGIGFLIQIVAVSVAYAVEVRRMHVIRLTVDPHSVIGQGSYKPNSTVPMSIFWLLPQYVLLGIGDVFNAVGLMEFFYDQSPEQMRSLGTTFFT SGIGVGNFLNSFLVTVVDKATTPTAGGGGKRWIGNDLNDSRLDYYYGFLLVLSTLNLGAFVWASSKYVYKKEVVYSVDQKGGGLLSAPPVMAGDECEMDG KV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	2.0	0.8553
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	2.8	0.9037
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	4.2	0.8787
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	7.1	0.8474
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	7.5	0.8580
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	9.2	0.8051
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	11.7	0.8198
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	12.0	0.7879
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008708 [exp]	12.5	0.7618
					Lus10036790 [exp]	14.9	0.8209

Compare expression of checked genes

Lus10034206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.