Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 453 / 2e-161 Peroxidase superfamily protein (.1) AT5G58400 397 / 1e-139 Peroxidase superfamily protein (.1) AT5G58390 378 / 8e-132 Peroxidase superfamily protein (.1) AT4G36430 339 / 2e-116 Peroxidase superfamily protein (.1) AT2G18150 329 / 3e-112 Peroxidase superfamily protein (.1) AT5G66390 325 / 6e-111 Peroxidase superfamily protein (.1) AT1G14550 322 / 9e-110 Peroxidase superfamily protein (.1) AT5G06720 321 / 3e-109 ATPA2 peroxidase 2 (.1) AT2G18140 319 / 2e-108 Peroxidase superfamily protein (.1) AT3G50990 315 / 1e-106 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 410 / 1e-144 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10029062 [exp] 405 / 4e-143 AT5G05340 292 / 1e-98 Peroxidase superfamily protein (.1) Lus10000346 [exp] 402 / 4e-140 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10030148 [exp] 394 / 7e-139 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 380 / 4e-132 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10003573 [exp] 377 / 1e-131 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10009932 [exp] 382 / 3e-131 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10032786 [exp] 376 / 3e-131 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10009934 [exp] 363 / 3e-126 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083600 [exp] 495 / 3e-178 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 449 / 5e-160 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 400 / 4e-140 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 393 / 5e-138 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 386 / 5e-135 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 369 / 2e-128 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 369 / 2e-128 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 366 / 3e-127 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 364 / 2e-126 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 363 / 3e-126 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10034207 pacid=23175832 polypeptide=Lus10034207 locus=Lus10034207.g ID=Lus10034207.BGIv1.0 annot-version=v1.0 ATGGCTTCTACTTCTAGTGTTGTCATGAGCTTGGCTCTTGTGATGCTGCTCCTAGTTGTTGGGAGCAGTAACGCTCAGCTGTCGACAAACTTCTACTCGA AATCCTGCCCCAAGCTTCATGAAGCTATCTTCCCTGTCGTTCAGGCTGCCGTCAAGAAAGAAGCTCGCATGGGCGCTTCTCTCCTCCGCCTCTTCTTCCA CGACTGCTTCGTCAATGGATGCGATGGCTCCATTCTGCTGGACGACACCTCCTCCTTCACCGGAGAGAAGAACGCCAACCCGAACCGCAACTCCGCCAGG GGGTTCGACGTCGTCGATAACATCAAAGCCGCCGTCGAAAAGGCCTGCCCCGGCGTGGTATCATGCGCCGACGTCCTCGCCATCTCCGCCCGTGACTCCA CCGTCCTCCTGGGGGGTCCCACCTGGAACGTGAAGCTAGGCAGGCGAGACGCAAGGACGGCGAGCCAATCCGCCGCGAACAACGGAATCCCGCCGCCGAC GTCCAACCTAAACCGTCTCACCAGCCGGTTCAACGCGCTGGGTCTCTCAGCCCGAGACCTAGTGGCTCTATCCGGATCCCACACGATCGGGCAAGCGAGA TGCACTTCGTTCAGGCCGAGGATCTACAACGAGAACAACATCGACGGGTCGTTGGCCCGGACCCGGAGATCCAACTGCCCGAGCCGAAACGGAACCGGAG ACAACAACCTGGCGCCGCTCGATTTCCAGACCCCGACCTCGTTTGATAACCGCTACTTCGGAAACCTCGTCAGCCAGCGCGGGCTGCTCCACTCCGACCA GCAGCTGTTCTCCGGCGCCGGATCCACTGACTCGATTGTTCGTAGTTACAGCACTAATGAGGGGGCGTTCAAGTCGGATTTCGCGTCGGCGATGGTGAAG ATGGGAGATATTAGCCCGTTGACTGGATCGAGCGGCGAGATCAGGAGGAATTGCAGGAGGCCGAATTAA
AA sequence Show only first row Show all	>Lus10034207 pacid=23175832 polypeptide=Lus10034207 locus=Lus10034207.g ID=Lus10034207.BGIv1.0 annot-version=v1.0 MASTSSVVMSLALVMLLLVVGSSNAQLSTNFYSKSCPKLHEAIFPVVQAAVKKEARMGASLLRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSAR GFDVVDNIKAAVEKACPGVVSCADVLAISARDSTVLLGGPTWNVKLGRRDARTASQSAANNGIPPPTSNLNRLTSRFNALGLSARDLVALSGSHTIGQAR CTSFRPRIYNENNIDGSLARTRRSNCPSRNGTGDNNLAPLDFQTPTSFDNRYFGNLVSQRGLLHSDQQLFSGAGSTDSIVRSYSTNEGAFKSDFASAMVK MGDISPLTGSSGEIRRNCRRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	1.0	0.9573
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	2.0	0.9527
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	3.0	0.9510
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	4.0	0.9437
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	4.1	0.9277
AT1G01490			Heavy metal transport/detoxifi...		Lus10028762 [exp]	4.5	0.9327
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	5.0	0.9426
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10004163 [exp]	6.0	0.9353
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	7.4	0.9317
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	7.5	0.9362

Compare expression of checked genes

Lus10034207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.