Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30340 168 / 1e-51 AS2 LBD13 LOB domain-containing protein 13 (.1) AT2G40470 150 / 3e-45 AS2 ASL11, LBD15 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) AT5G63090 124 / 2e-35 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G30130 123 / 5e-35 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT3G27650 117 / 3e-33 AS2 LBD25 LOB domain-containing protein 25 (.1) AT5G66870 117 / 1e-31 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT1G16530 112 / 2e-31 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT1G07900 108 / 3e-29 AS2 LBD1 LOB domain-containing protein 1 (.1) AT2G28500 108 / 8e-29 AS2 LBD11 LOB domain-containing protein 11 (.1) AT1G31320 105 / 1e-28 AS2 LBD4 LOB domain-containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029061 [exp] 295 / 2e-102 AT2G30340 201 / 1e-64 LOB domain-containing protein 13 (.1) Lus10009930 [exp] 161 / 1e-49 AT2G30340 230 / 5e-76 LOB domain-containing protein 13 (.1) Lus10024183 [exp] 143 / 2e-42 AT2G30340 230 / 4e-76 LOB domain-containing protein 13 (.1) Lus10027676 [exp] 128 / 5e-37 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 126 / 3e-36 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10031285 [exp] 123 / 3e-35 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031191 [exp] 121 / 6e-35 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 121 / 2e-34 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 120 / 2e-34 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G081200 [exp] 162 / 3e-50 AT2G40470 249 / 2e-84 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.013G156200 [exp] 156 / 1e-47 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.019G127300 [exp] 145 / 2e-43 AT2G40470 225 / 1e-74 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1) Potri.007G066700 [exp] 131 / 1e-38 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.005G097800 [exp] 129 / 5e-38 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.010G184400 [exp] 121 / 1e-34 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 120 / 3e-34 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G081400 [exp] 120 / 4e-34 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.008G072800 [exp] 119 / 4e-34 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.015G082200 [exp] 120 / 5e-34 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10034208 pacid=23175941 polypeptide=Lus10034208 locus=Lus10034208.g ID=Lus10034208.BGIv1.0 annot-version=v1.0 ATGATGGAGAAATCAGATGATGCTGCAGAAAGAGTGATGATGCTAAGTAGCAGTAGTAGTAGTCAAGCTCAAGCATCAGGAGGTCTGAATACAATAACTC CATGTGCAGCCTGCAAGCTGCTGAGGAGGAGATGTGCAGCTCAAGAGTGCCCTTTCTCTCCTTACTTCTCCCCTCTCGAGCCCCACAAGTTTGCTTATGT CCACAAGGTCTTTGGTGCCAGCAATGTCTCCAAGATGCTCATGGAAGTGGGAGAGAGCCAGAGGTGGGATGCAGCAAATAGCCTAGTATACGAGGCAAGT GTGAGGCTAAGAGACCCTGTTCATGGCTGCGTGGGTGCAATCTCACTTCTACAACACCAAATCCACTCCTTGGAATCCGAACTTGCCGCTCTTAGGGCTG AGATTCTTCGCCATAGATACAACGCTGCAGCAGCAACATCGTCACCATCAACAATGGACATTGTTAATACTACTACTACATCACCTATGATCATCAATTC CCCTCCCCCTCCTGTTGATTTTAGCCACGATGCTCGAGGCCACGGACCAGTGCTCCTTCCTCCCATCACGCTGTCGACAGCTTCTTCTTCCTCGTCGTCC CCTTCGAATCGTTACAGTAGCATTTCGAATAACGATCACAACATCCCCTTCTATGGTTAA
AA sequence Show only first row Show all	>Lus10034208 pacid=23175941 polypeptide=Lus10034208 locus=Lus10034208.g ID=Lus10034208.BGIv1.0 annot-version=v1.0 MMEKSDDAAERVMMLSSSSSSQAQASGGLNTITPCAACKLLRRRCAAQECPFSPYFSPLEPHKFAYVHKVFGASNVSKMLMEVGESQRWDAANSLVYEAS VRLRDPVHGCVGAISLLQHQIHSLESELAALRAEILRHRYNAAAATSSPSTMDIVNTTTTSPMIINSPPPPVDFSHDARGHGPVLLPPITLSTASSSSSS PSNRYSSISNNDHNIPFYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	0	1
					Lus10024932 [exp]	2.0	0.8965
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	3.2	0.8814
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	9.3	0.8908
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10021325 [exp]	10.5	0.8298
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	12.0	0.8608
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	13.1	0.8834
					Lus10038768 [exp]	16.5	0.8542
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	16.5	0.8686
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	17.2	0.8869
AT3G10120			unknown protein		Lus10039676 [exp]	34.0	0.8767

Compare expression of checked genes

Lus10034208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.