Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06930 49 / 8e-08 unknown protein AT5G01790 48 / 4e-07 unknown protein AT2G40475 47 / 1e-06 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT4G25850 40 / 0.0004 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT4G25845 39 / 0.0004 unknown protein AT3G56260 39 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029060 [exp] 241 / 9e-83 AT5G01790 46 / 2e-06 unknown protein Lus10012896 [exp] 79 / 3e-18 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10030550 [exp] 71 / 4e-15 AT5G01790 50 / 2e-07 unknown protein Lus10025251 [exp] 70 / 4e-15 AT1G06930 47 / 8e-07 unknown protein Lus10009096 [exp] 69 / 1e-14 AT1G06930 47 / 2e-06 unknown protein Lus10014158 [exp] 40 / 0.0002 AT1G06930 45 / 8e-06 unknown protein Lus10009929 [exp] 39 / 0.0005 AT1G06930 61 / 1e-11 unknown protein Lus10022751 [exp] 39 / 0.0008 ND 42 / 5e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133200 [exp] 58 / 9e-11 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 55 / 2e-09 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 52 / 2e-08 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.013G156100 [exp] 41 / 0.0001 AT1G06930 / unknown protein Potri.019G127400 [exp] 40 / 0.0002 AT1G06930 / unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10034209 pacid=23176034 polypeptide=Lus10034209 locus=Lus10034209.g ID=Lus10034209.BGIv1.0 annot-version=v1.0 ATGGTGGCCACTGAGTTGATGAAGCTTCATCAGCAAGACGCCGCCAAGTTCTTCTTAACCACCACCGCCGGTAGCAGGAAGATAACGTCGGAAAAAGACA TAAACGCCCTCCACAATCCATCTTTCAGAGTCTACTACGGCGGCTCCTCCGTCGCCGCCGTCCCTTTCACCTGGGAATCCGCTCCCGGAACTCCCAAGCA CAAACTCTTCTCCTCCGTCGACGACGACAACTACAATATCACTCCGCCGCTCACGCCGCCGCCTTCCTTCTACTCCACCGCCGCCTGCGCCAATTACTCC CACTCATCCTCCGCCGGCGCCAAAAACATCCTCGGATCGTTGTTAGCTTCTTCCTCGTCGTCGTCTACGTCATCCTCCGGCGGGGATGCTGACGTGTACA ACAGTAGGAGGCAGAAGAAGAAGAAGCCGCGTCTGATCAGCCGGTGGTTCTCCTGCTCCGCAAGGAGACTTACAGTGGCGGATTGGTAA
AA sequence Show only first row Show all	>Lus10034209 pacid=23176034 polypeptide=Lus10034209 locus=Lus10034209.g ID=Lus10034209.BGIv1.0 annot-version=v1.0 MVATELMKLHQQDAAKFFLTTTAGSRKITSEKDINALHNPSFRVYYGGSSVAAVPFTWESAPGTPKHKLFSSVDDDNYNITPPLTPPPSFYSTAACANYS HSSSAGAKNILGSLLASSSSSSTSSSGGDADVYNSRRQKKKKPRLISRWFSCSARRLTVADW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06930			unknown protein		Lus10034209 [exp]	0	1
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	1.4	0.8802
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	3.2	0.8871
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	4.9	0.8367
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10008622 [exp]	6.5	0.8309
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	8.7	0.8710
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	9.0	0.8714
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10018764 [exp]	10.5	0.8575
AT4G21620			glycine-rich protein (.1.2)		Lus10018454 [exp]	10.5	0.7473
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	12.5	0.8566
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	13.5	0.8559

Compare expression of checked genes

Lus10034209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.