Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60360 265 / 5e-90 EDA14, UTP11 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029059 [exp] 448 / 2e-162 AT3G60360 264 / 8e-90 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024300 [exp] 327 / 9e-115 AT3G60360 287 / 7e-99 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1) Potri.006G026002 [exp] 123 / 6e-36 AT3G60360 101 / 7e-28 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF03998 [flax] [poplar] Utp11 Utp11 protein
Representative CDS sequence Show only first row Show all	>Lus10034210 pacid=23176063 polypeptide=Lus10034210 locus=Lus10034210.g ID=Lus10034210.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTGAAGAATGTTCTCCCTCAAAGAATCCATAGGGAACGATCGCAACCAGAGTCGAGGAAGAAGTTTGGGCTTCTGGAGAAGCACAAAGACT ATGTTGTTCGTGCGAGGGCGTTCCAGAAGAAGCGAGATTTTTTGAAGAATCTGGAAGAGAAAGCAGCTTTCAGAAATCCTGATGAGTTCTACCATCGCAT GATTAAATCCCAAACTGTAAATGGAGTTCATCGTTCACTGGGTGAGCCTAATAAATACACACATGAAGAATTGATGTTGATGAAGACTCAAGATGCAGGA TACATTCTGGAAAAACTTCAGATCGAGAAAAAGAGAGTCGAAAAGCTTGCTTCTGTGTTGCACTCGAGTGGAGATCAGCCATCAAACAAGCACATTTATT TTGCTGAAGATAGAGAGGAGGCGAAAGAGATAAGGAGACGCCATGCTGAAAACGGCAAGGGTGCTCATAATCGAGGAATGCCAGTGCCTGATTCTATTCA GAGGAAAGTAGCCGTTTCCTATAGAGAGCTAGAAGCCAGGAAGAACAGAGTCAACCAGTTGGAGAAGCTTTACATGGAGATGGAATTACAGAAGGAGCTT CAGAAAAAGGGCCGAAAGCGCAAGTTGCGAGAAGATGAAACCGTGACACCAGCATCCGGACCAGTATACAAATGGAGAAGTGAACGCAAGAGGTGA
AA sequence Show only first row Show all	>Lus10034210 pacid=23176063 polypeptide=Lus10034210 locus=Lus10034210.g ID=Lus10034210.BGIv1.0 annot-version=v1.0 MSSLKNVLPQRIHRERSQPESRKKFGLLEKHKDYVVRARAFQKKRDFLKNLEEKAAFRNPDEFYHRMIKSQTVNGVHRSLGEPNKYTHEELMLMKTQDAG YILEKLQIEKKRVEKLASVLHSSGDQPSNKHIYFAEDREEAKEIRRRHAENGKGAHNRGMPVPDSIQRKVAVSYRELEARKNRVNQLEKLYMEMELQKEL QKKGRKRKLREDETVTPASGPVYKWRSERKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	0	1
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	1.4	0.9118
AT3G62140			unknown protein		Lus10038035 [exp]	2.0	0.9212
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	2.8	0.9042
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	4.5	0.8747
AT5G05360			unknown protein		Lus10012213 [exp]	5.5	0.8940
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	6.2	0.9056
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	6.2	0.8608
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	10.2	0.8911
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	11.0	0.9001
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	11.3	0.8904

Compare expression of checked genes

Lus10034210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.