Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40480 301 / 6e-96 Plant protein of unknown function (DUF827) (.1) AT3G56270 184 / 4e-52 Plant protein of unknown function (DUF827) (.1) AT2G38370 95 / 2e-20 Plant protein of unknown function (DUF827) (.1) AT3G51720 76 / 1e-14 Plant protein of unknown function (DUF827) (.1) AT4G33390 61 / 2e-09 Plant protein of unknown function (DUF827) (.1) AT2G26570 55 / 1e-07 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029055 [exp] 590 / 0 AT2G40480 226 / 6e-69 Plant protein of unknown function (DUF827) (.1) Lus10029056 [exp] 179 / 5e-54 AT2G40480 124 / 1e-34 Plant protein of unknown function (DUF827) (.1) Lus10025249 [exp] 172 / 1e-46 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 173 / 3e-46 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 49 / 1e-05 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 47 / 4e-05 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049201 [exp] 425 / 3e-143 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.016G133300 [exp] 117 / 2e-27 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 54 / 2e-07 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 52 / 1e-06 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10034211 pacid=23175938 polypeptide=Lus10034211 locus=Lus10034211.g ID=Lus10034211.BGIv1.0 annot-version=v1.0 ATGTCCGACGAATCTCCTCCGGCGCCGGATCCGGTGCCGGGAACTCCTGGAATCAACGAGATTAGATCCCACCTCGAAGGGTTCTGCCCTGACCACGGCG GCGGCGACGGCGGAACAACAGGGTCGACGAGGAAATTCGGGCTGAGAGCTGAGATCGACACCTCGCCGCCATTTGGGTCGGTGAAGGAAGCCGTTGATCG GTTCGGCGGCAGCGGGCCCTGGGTTCCCTGTTACAGAATTGGAGACGACTTTGGGGAGATAGACATAAAGAAAGTGGAGGAACAAGCTGCTGAGTTAGAA AAAGATCTGATAGTGAAGGAATTGGAAACACTGGATGTGCTTGAAGAACTGGGGACAACCAAGAAGATTGTGGAAGATTTGAAGCTCCAGCTACAGAAAG AAGCGCTTCGGTGCATGACGATCCAAGTCCCCGACCACATGTCGAGTCCAGCTGCTGCTATCAAAAGGGTAAACAAGGAATTTCATCATCATCAGCATTA TGAGCAGCAGCAGAGGTTGATGATGATGAGGAGTAGTCCTAGTCCTAGCCCATCGTCGTCTCCCGAGATGATATTGATGGAGCTGAAGCAGGCGAAGCTG AACCTCGGTAAAACCATTAACGACCTCGGTGTGATTCAAACTTCTGTCAAGTCTCTGAACAAGGGCATGAAGCTGGAGAAATTGTTTCTTCAGAACACCC GCAAGAGGCTAACCTCGAAATTTGCAGGAGTGCTGTCTTTGGAGGAGGAGCTGAAACATGCCAGAAGGAAACCGGATCATCAGGAGCAGTTAAAGATGAT GACTGAAGTTTCGAAGCCGGTAAATGGACAGTTTACTAAGAATGTTGATCTGAGAACTGCCGAGTTGAGGCTGGTTGCTGCAAGAAAGATGGAGGAAGCT GCAAGGGCTGCTGAAGCCGTTGCATTAGCCGAGATCAAGTTCTTCTCAGAGCCGGAGAAGCCGAGCTCATTCAAACCGGTTTCGCCTCTGATCCATAAAC CGGAAGGGAAGCCGGTCAAGTATGAACCTTCAAACAGTAAGATGCAGATCCTGAAGAAGATGAGAGAAGCAACGGAGGAAGTTAGAAGAAGCAAGCAGGC ATTGGAAGACGCGCTGAACAAAGTCGAAATGGCGGGAAGGAAGCAATTTGATGCACAGGAAGCTTTCCTTAAATGGATTCCGGGGGATGATGATCACGAC GGTCTAGGCCAGGCAGCTGCAGCTTACTACAACACCAGACTCAGCAACATGCAGTTCTTCCGCCCCGCTGACCACTGCAAAGAACCGAACCGAATCGAAA CCGAACCAAAGCCTGTGTTAAGGCCAACGGTGTCGATGCGGGACTTCCTAGGCAGGAAGCAGCGAGTCGTGACCGAAGATTCGAGACCGGTGGAAGCAAC AGGAGGGCGTAACGGGAGGCAAAAGGTGGCATTAAGTCAGATGCTTCATGAGATAAGAGACGATATATCATTCCATCCGAGGCCTCCAAAACACGAAGCG GGTGGAGATCAGAAGCAGCAGTTCTTCACGCAGAGGAGGAAGTTCGGGTTCATTCACATTTCGTTGCCTATGTCGAAACAAAGCAAGAAAAAAGATGCAA GATTTGATTAG
AA sequence Show only first row Show all	>Lus10034211 pacid=23175938 polypeptide=Lus10034211 locus=Lus10034211.g ID=Lus10034211.BGIv1.0 annot-version=v1.0 MSDESPPAPDPVPGTPGINEIRSHLEGFCPDHGGGDGGTTGSTRKFGLRAEIDTSPPFGSVKEAVDRFGGSGPWVPCYRIGDDFGEIDIKKVEEQAAELE KDLIVKELETLDVLEELGTTKKIVEDLKLQLQKEALRCMTIQVPDHMSSPAAAIKRVNKEFHHHQHYEQQQRLMMMRSSPSPSPSSSPEMILMELKQAKL NLGKTINDLGVIQTSVKSLNKGMKLEKLFLQNTRKRLTSKFAGVLSLEEELKHARRKPDHQEQLKMMTEVSKPVNGQFTKNVDLRTAELRLVAARKMEEA ARAAEAVALAEIKFFSEPEKPSSFKPVSPLIHKPEGKPVKYEPSNSKMQILKKMREATEEVRRSKQALEDALNKVEMAGRKQFDAQEAFLKWIPGDDDHD GLGQAAAAYYNTRLSNMQFFRPADHCKEPNRIETEPKPVLRPTVSMRDFLGRKQRVVTEDSRPVEATGGRNGRQKVALSQMLHEIRDDISFHPRPPKHEA GGDQKQQFFTQRRKFGFIHISLPMSKQSKKKDARFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	0	1
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	1.0	0.9394
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	2.0	0.8929
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	3.5	0.9028
AT5G17910			unknown protein		Lus10009544 [exp]	5.0	0.8890
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	5.7	0.8947
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	5.9	0.8880
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	6.0	0.8823
AT2G40820			unknown protein		Lus10038998 [exp]	6.3	0.8866
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	6.9	0.8888
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040801 [exp]	6.9	0.8603

Compare expression of checked genes

Lus10034211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.