Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45820 474 / 4e-166 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 475 / 5e-166 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G18700 445 / 4e-154 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G01810 441 / 1e-153 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G07070 439 / 2e-152 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45810 433 / 2e-149 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 425 / 7e-146 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 412 / 7e-141 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT1G30270 403 / 1e-137 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT4G30960 398 / 3e-136 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029054 [exp] 841 / 0 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10012893 [exp] 553 / 0 AT5G58380 446 / 3e-154 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 488 / 2e-171 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 487 / 6e-171 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 474 / 7e-166 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 464 / 8e-162 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10015275 [exp] 437 / 2e-150 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 421 / 2e-145 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 417 / 5e-144 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048800 [exp] 550 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 523 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 490 / 2e-172 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 483 / 2e-169 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 466 / 4e-163 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.011G067600 [exp] 449 / 8e-155 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 446 / 5e-154 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 424 / 2e-146 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 419 / 2e-144 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G062800 [exp] 414 / 4e-142 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034212 pacid=23175989 polypeptide=Lus10034212 locus=Lus10034212.g ID=Lus10034212.BGIv1.0 annot-version=v1.0 ATGGAGAACAACAAAGGGAGCAATGTTCTGATGGAGAGGTACGAAGTAGGGAAACTTCTAGGCCAAGGCAACTTTGCGAAAGTCCACCACGCTCGAGACC TTAAATCGGGCCAAAGCGTGGCAATCAAGGTAATCGACAAGGAGAAGGCTCTGAAAGCTGGTCTAACAGACAACATCAAGCGAGAGATATCTGTGATGAG GCGTGTCAAACATTCGAACGTGCTTCAACTCTATGAGGTCATGGCATCGAAGAAAAAGATCTACTTTGTCATAGAGTATGCCAAAGGCGGTGAGCTTTTC AACAAGGTGGCTAAAGGAAGGCTGAAGGAAGATGCCGGTAGGAAGTATTTCCGGCAGCTGATCCACGCTGTCGAGTTTTGTCACGGGAAGGGAGTTTATC ACCGCGACTTGAAGCCCGAGAATTTGCTTCTTGATGGGAATGGAACGCTGAAAGTGTCCGATTTCGGACTTAGTGCACTTCAAGATGACCATTCTCGAGA TGGCTTGTTCCGCACGACATGTGGGACTCCGGCCTATGTGGCTCCTGAGGTTTTGTATGGTCGGGGCTACGATGGAGCGAAAGCCGATATTTGGTCTTGT GGTGTGATCTTGTATGTGATGCTGGCTGGATATCTTCCGTTCCACGATGCGAACACTATCGTTATGTACCGGAAGGCGAGTAATGGTGAGTACAAGTCGC CTGCTTGGTTTGCACCGGAGGTTTGCCAATTGCTGTCCAGAATGCTTGACCCGAATCCGGTTAATCGAATCACGATATCCGAGATAATGGAGGATCCTTG GTTCACGAAAAAGCCGGATTCTTTCCAATCTGTCAAGTCGTTTACTACTACTGATTCGATCGAGGAAGAAGTGAAGGACTTGGGGAAACCGACGAGTCTA AATGCATTCGACATAATCTCCCACTCATTCGGACTGAACCTGTCCGGTTTGTTCGTGGAGAACGATCACAACAAAGAAGCAGTAAAGTTTGTGTCTTTGC AGTCCGCCTCAACGATTCTGGCCAAGCTGGAGGATATCGCGACGAATCTAAAGATGCAGATTAGGAAGAGAGACAGAGGCCTTTTGGTTTTGGAGGAATT AGATGATCAAAGGAGGAGGTTTTTTGTATCGATTGATGTCGAGATATTCGAGTTCACTCCTTACTGTCATCTGGTGGAGCTGCAGAATTCGGGTGGCGGT TCGAGCAAGAAGTGGATGGTCATGGAACAGAAGTTGAGAGAAGATCTCAAGGACATTGTTTGGGCTTGGAATGATTGA
AA sequence Show only first row Show all	>Lus10034212 pacid=23175989 polypeptide=Lus10034212 locus=Lus10034212.g ID=Lus10034212.BGIv1.0 annot-version=v1.0 MENNKGSNVLMERYEVGKLLGQGNFAKVHHARDLKSGQSVAIKVIDKEKALKAGLTDNIKREISVMRRVKHSNVLQLYEVMASKKKIYFVIEYAKGGELF NKVAKGRLKEDAGRKYFRQLIHAVEFCHGKGVYHRDLKPENLLLDGNGTLKVSDFGLSALQDDHSRDGLFRTTCGTPAYVAPEVLYGRGYDGAKADIWSC GVILYVMLAGYLPFHDANTIVMYRKASNGEYKSPAWFAPEVCQLLSRMLDPNPVNRITISEIMEDPWFTKKPDSFQSVKSFTTTDSIEEEVKDLGKPTSL NAFDIISHSFGLNLSGLFVENDHNKEAVKFVSLQSASTILAKLEDIATNLKMQIRKRDRGLLVLEELDDQRRRFFVSIDVEIFEFTPYCHLVELQNSGGG SSKKWMVMEQKLREDLKDIVWAWND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	2.4	0.8426
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	2.8	0.8327
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	3.0	0.8388
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	4.5	0.8424
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	7.5	0.8092
AT3G58060			Cation efflux family protein (...		Lus10016239 [exp]	8.5	0.7332
AT3G18215			Protein of unknown function, D...		Lus10009010 [exp]	8.8	0.8095
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	10.6	0.7992
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	12.3	0.7321
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	12.6	0.8255

Compare expression of checked genes

Lus10034212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.