Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10970 525 / 0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G11570 107 / 5e-26 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G38740 49 / 3e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029053 [exp] 667 / 0 AT3G10970 539 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10002002 [exp] 103 / 2e-24 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 102 / 4e-24 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10018906 [exp] 42 / 0.0005 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049000 [exp] 535 / 0 AT3G10970 510 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G104366 [exp] 111 / 2e-27 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 106 / 1e-25 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.014G043500 [exp] 47 / 8e-06 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G077200 [exp] 45 / 7e-05 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 44 / 0.0001 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10034213 pacid=23176043 polypeptide=Lus10034213 locus=Lus10034213.g ID=Lus10034213.BGIv1.0 annot-version=v1.0 ATGGAGTGCAGTAGTTGCAGCACTGGCCGGAATTTCACCAGCTCATCGTCGTCTTCTCTGTTGCTTCCGTCGAGACCTTCTCGTCTCCCTCGCACTCTTT CGCCTTCAAAGCTCAATTTATCCAAACAAAAGCGTCCACAGCGACTAATCGTCACGAAAGCTTGTGGGGACGAAGGAAATGGGTCGGGTAACGGGTTCCC TGTCCCTCCAGACAAGCTTTTCTCACAGGAGGCTATTGGAGCTGAATATGGGGAAGGTTTTGAGACATTCAGGCAGGATGGACCTTTGAAGGTTGATGTG GATTTTTTGAATGAGAGGCTACAAGAAGGTTTCCTGAAACGGATACGCTATGCCATGAAACCGGATGAAGCTTATGGTCTTATCTTCTCTTGGGACAATG TTGTGGCGGATACTCGGACTATGAAGATGAAGATATGGAAACAACTTGCTTCTGAAGAAGGAAAAGAAATACCTGAAGATGAACGTGTACAAAGACTGAT GATATATGCAGGTGCTGACCATGTACTGCGTAAGGTATTACTGTGGGAGTTGACAGAAAGTGAGTTGGACAGATTGAAGTTGAGGTTGTCGCAGTTATAT CTCGACTATCTCGTGAAACTTAGAAAGCCGATTGATGGGCTGCAAGAGTGGCTGGATGCAGTATCGAGATCTGGCATCCCTTGTGCTGTGGTTTCGAGTC TCAATCGGATCAGCATGGTCGAAGCCTTGGAGCGGTTGGGGCTCAAGAAGTATTTTCAGGCAATTGTGTCCGAGGAAGATGGCATGGAGTCGATAGCACA CAAATTTCTTTCTGCAGCTGTCAAGCTGGATAGAAAACCATCAAAATGTGTCGTGTTCGAGGATGATCCGAGAGGGGTTACTGCTGCTCACAACTGTACT ATGATGGCCGTGGCACTAATCGGAGTCCATCCTGCGTACGAGCTGGTGCAGGCGGACCTTGCAGTTGCGAGCTACAACGAGCTTTCGGTGATCAACCTCA GGAGATTATACGCTAACAAGGGTTCGACATTTATGGACAGGGAAAAGCAGAGGATCAAGAAATCTCCTCCGAAACGAAAGCTAACCATCGACACCATCTA CTGA
AA sequence Show only first row Show all	>Lus10034213 pacid=23176043 polypeptide=Lus10034213 locus=Lus10034213.g ID=Lus10034213.BGIv1.0 annot-version=v1.0 MECSSCSTGRNFTSSSSSSLLLPSRPSRLPRTLSPSKLNLSKQKRPQRLIVTKACGDEGNGSGNGFPVPPDKLFSQEAIGAEYGEGFETFRQDGPLKVDV DFLNERLQEGFLKRIRYAMKPDEAYGLIFSWDNVVADTRTMKMKIWKQLASEEGKEIPEDERVQRLMIYAGADHVLRKVLLWELTESELDRLKLRLSQLY LDYLVKLRKPIDGLQEWLDAVSRSGIPCAVVSSLNRISMVEALERLGLKKYFQAIVSEEDGMESIAHKFLSAAVKLDRKPSKCVVFEDDPRGVTAAHNCT MMAVALIGVHPAYELVQADLAVASYNELSVINLRRLYANKGSTFMDREKQRIKKSPPKRKLTIDTIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	1.7	0.9032
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	2.6	0.8509
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	3.7	0.9004
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	4.0	0.8625
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	5.5	0.8640
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	6.0	0.8524
AT5G61670			unknown protein		Lus10016713 [exp]	8.4	0.8587
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10034965 [exp]	10.5	0.7774
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	11.3	0.8286
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	12.5	0.7828

Compare expression of checked genes

Lus10034213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.