Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67080 60 / 1e-11 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G50310 59 / 2e-11 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT3G06030 59 / 5e-11 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT5G55090 58 / 6e-11 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 58 / 6e-11 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G54960 53 / 5e-09 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT2G32510 52 / 5e-09 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT4G36950 50 / 4e-08 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT4G12020 50 / 5e-08 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G09000 49 / 6e-08 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029047 [exp] 171 / 7e-56 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10026894 [exp] 93 / 5e-24 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 87 / 2e-21 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 83 / 2e-21 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 83 / 1e-20 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 82 / 1e-19 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034246 [exp] 80 / 1e-19 AT4G36950 107 / 7e-28 mitogen-activated protein kinase kinase kinase 21 (.1) Lus10031963 [exp] 78 / 1e-19 AT3G06030 87 / 1e-21 NPK1-related protein kinase 3 (.1) Lus10034285 [exp] 80 / 8e-19 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149500 [exp] 54 / 2e-09 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.003G184200 [exp] 54 / 2e-09 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.014G035500 [exp] 54 / 2e-09 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G139300 [exp] 53 / 3e-09 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.010G092000 [exp] 52 / 6e-09 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.013G022700 [exp] 52 / 6e-09 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.001G042400 [exp] 52 / 6e-09 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.005G033400 [exp] 52 / 7e-09 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.002G129100 [exp] 52 / 1e-08 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.009G131100 [exp] 52 / 1e-08 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034217 pacid=23176090 polypeptide=Lus10034217 locus=Lus10034217.g ID=Lus10034217.BGIv1.0 annot-version=v1.0 ATGCTGACCGGAAGCCTGCCGTGGAGTGATTTGAAGCAGGAAAAGGATTTGATGAGCATGATCGGAAAGGGAGGTCAGCCGAAGATTCCGGAGTGGGTTT CCGAAGAAGGGAAGGATTTTCTGAACAAGTGCTGTATTAGGGGTTCAGAGCTGCGTTTTCCGGCTGAATTGGTTATGCAACATCCGTTCGTCACCGGCGG GAGGATCTCGACGGCGGTGATCGGACCAAGAGGAAGGAATTGGAGTGTTGGCCGGGAAACAAGGGCAGCGCCGGAGCAGAGGTCCCCTGCTGCTGCTGCT GTTTACACCTTGTTTCCTCCTAATCAAGCTGCTTTAGTCGCACTTTGA
AA sequence Show only first row Show all	>Lus10034217 pacid=23176090 polypeptide=Lus10034217 locus=Lus10034217.g ID=Lus10034217.BGIv1.0 annot-version=v1.0 MLTGSLPWSDLKQEKDLMSMIGKGGQPKIPEWVSEEGKDFLNKCCIRGSELRFPAELVMQHPFVTGGRISTAVIGPRGRNWSVGRETRAAPEQRSPAAAA VYTLFPPNQAALVAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10034217 [exp]	0	1
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	5.5	0.8803
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	5.7	0.9122
					Lus10011203 [exp]	13.0	0.8458
AT5G08240			unknown protein		Lus10040984 [exp]	29.7	0.8821
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	33.1	0.8835
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Lus10005755 [exp]	33.6	0.8787
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	37.1	0.8729
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	40.6	0.8756
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	47.0	0.8134
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10043177 [exp]	52.9	0.8531

Compare expression of checked genes

Lus10034217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.