Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56310 645 / 0 Melibiase family protein (.1.2) AT5G08370 475 / 4e-167 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 456 / 5e-159 ATAGAL1 alpha-galactosidase 1 (.1) AT3G26380 90 / 5e-19 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029046 [exp] 872 / 0 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10024401 [exp] 476 / 1e-166 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 464 / 2e-162 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 461 / 2e-161 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 454 / 4e-158 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 433 / 6e-150 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 429 / 2e-148 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 415 / 1e-142 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10017365 [exp] 360 / 4e-121 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056700 [exp] 683 / 0 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.018G152200 [exp] 480 / 4e-168 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 467 / 3e-163 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 459 / 4e-160 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 452 / 1e-157 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G048400 [exp] 88 / 2e-18 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 84 / 7e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.008G185300 [exp] 81 / 4e-16 AT3G26380 830 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10034218 pacid=23175846 polypeptide=Lus10034218 locus=Lus10034218.g ID=Lus10034218.BGIv1.0 annot-version=v1.0 ATGAATCAATTATCTGTCGTTTTCCCGCTCACCAGCAAAAGAACAATAATATATATCAAGCTAGCAGCTGCAGCACGAAAAGGACTGAAACTTTCGATTG ATCGATTCCTTCTGCCAGAAATGATGAAAACTGGAGCGATTTTCGCTCTGCTTATCATTACCCTCTACTTCCCTTGTGAGGTGGTGGCTTTTCGTCCTCT GTTGCAGAGATACGAAGAAGGAAACGAGTATGGCTACAGCAAAACCTTCAATGCCATCTTCGATACTTCCAAGTATGGGATTTTGCAGCTCCAGAATGGC CTAGCTAGAACTCCTCCCATGGGATGGAATAGCTGGAATTTCTTTGCTTGCAACATCAATGAAACTCTCATCAAGGAAACAGCTGATGCTCTTATCTCGA CTGGTTTGGCTGAATTAGGCTATACATATGTCAATATAGATGATTGCTGGTCTTATGTAACCCGGGATGAAAAGGGTCAAATGGTTCCTGATCCGAAAAC TTTTAAGTCGGGGATTAAGACTCTTGCTGATTATGTTCACTCGAAAGGCCTGAAGCTTGGTATCTATTCTGATGCTGGAGCTTTTACTTGTCAAGTCCGG CCAGGTTCGATATTCCATGAGAAAGAAGATGCAACTTCATTTGCTTCTTGGGATGTCGATTATCTGAAGTATGACAACTGTTTCAATCTCGGCATTGATC CGAAAAAAAGATACCCACCAATGCGCGATGCTCTTAATGCAACTGGACGCTCGATTTTCTACTCGATCTGTGAATGGGGTGTGGATGACCCGGCCTTATG GGCTGGAAAAGTCGGCAACAGTTGGAGTACAACAGAAGATATCACTGATACATGGACAAGCATGAGTACTATTGCTGACCTAAATGACAAGTGGGCGGCT TATGCTGGACCTGGCGGATGGAACGATCCGGACATGCTGGAAGTTGGTAATGGAGGCATGGATTACCACGAATACCGTTCCCATTTTAGCATCTGGGCTT TGATGAAGGCCCCTCTTTTGATAGGTTGCGATGTCAGAAATCTGACTGCAGCAACTAAGGAGATTCTAAGCAATGTGGAGGTCATTGCGGTGAATCAAGA TCCACTTGGGGTTCAAGGAAGAAAAGTGCATACCAATGGAACTGATGGTTGCCAGCAGGTTTGGGCAGGCCCTTTATCTGACCATAGCATGGCCGTTGTG CTATGGAACCGATGCTCGGAGGCTGCTGTGATAACAGCTCAATGGGATGTGATCGGACTGGAAGCCGGCACGAGTGTCTCAGTGAGAGACCTTTGGCAGA AAAAAGTCGTGATGAACAATGCGGTGGCCTCGTTTGGTGCTCAAGTCCATGCTCATGGCTGCGAGATGTACATTTTCACTCCTCAGGCAGCTGGATCGGA AGCTATGTAG
AA sequence Show only first row Show all	>Lus10034218 pacid=23175846 polypeptide=Lus10034218 locus=Lus10034218.g ID=Lus10034218.BGIv1.0 annot-version=v1.0 MNQLSVVFPLTSKRTIIYIKLAAAARKGLKLSIDRFLLPEMMKTGAIFALLIITLYFPCEVVAFRPLLQRYEEGNEYGYSKTFNAIFDTSKYGILQLQNG LARTPPMGWNSWNFFACNINETLIKETADALISTGLAELGYTYVNIDDCWSYVTRDEKGQMVPDPKTFKSGIKTLADYVHSKGLKLGIYSDAGAFTCQVR PGSIFHEKEDATSFASWDVDYLKYDNCFNLGIDPKKRYPPMRDALNATGRSIFYSICEWGVDDPALWAGKVGNSWSTTEDITDTWTSMSTIADLNDKWAA YAGPGGWNDPDMLEVGNGGMDYHEYRSHFSIWALMKAPLLIGCDVRNLTAATKEILSNVEVIAVNQDPLGVQGRKVHTNGTDGCQQVWAGPLSDHSMAVV LWNRCSEAAVITAQWDVIGLEAGTSVSVRDLWQKKVVMNNAVASFGAQVHAHGCEMYIFTPQAAGSEAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	0	1
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	2.2	0.9798
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	3.5	0.9670
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	3.9	0.9714
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	4.4	0.9623
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	5.7	0.9751
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	5.9	0.9707
AT5G24890			unknown protein		Lus10009793 [exp]	6.9	0.9643
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	7.9	0.9749
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	9.2	0.9713
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	9.5	0.9643

Compare expression of checked genes

Lus10034218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.