Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56320 455 / 2e-153 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 390 / 1e-129 Nucleotidyltransferase family protein (.1.2.3.4) AT3G51620 394 / 5e-127 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 335 / 3e-101 nucleotidyltransferases (.1) AT2G39740 57 / 2e-08 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 49 / 1e-05 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029045 [exp] 1085 / 0 AT3G56320 456 / 1e-153 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 610 / 0 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10012885 [exp] 468 / 6e-159 AT3G51620 297 / 5e-93 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 369 / 2e-118 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 362 / 1e-114 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 359 / 1e-113 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 338 / 1e-108 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 342 / 2e-103 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 325 / 5e-102 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056800 [exp] 538 / 0 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.019G128800 [exp] 365 / 5e-116 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.013G154900 [exp] 359 / 6e-114 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 352 / 5e-107 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 344 / 2e-104 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 344 / 2e-104 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 343 / 6e-104 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 62 / 2e-11 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1) Potri.001G400800 [exp] 47 / 4e-05 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10034219 pacid=23175983 polypeptide=Lus10034219 locus=Lus10034219.g ID=Lus10034219.BGIv1.0 annot-version=v1.0 ATGGGTGGCTTACCGCTTGTATTATCGTCATCATCAGCCTTTTCCTTCCCCAGACCTGAACTCATCCCATTGTCAATCGACCCTGAACTCTGGTCGATGG CTGAGCATAGAATCTACGAGATTCTATGCACTACTCAACCTGCTTTGGAATCTGAGAAGAAGAGGGAGGAGGCGATTTCTTACATCATCGCCTTGATTAA AGCTCATTACCCCACTGAGGTTTTCGCTTTTGGATCAGTGTCCTTGAAAACATATCTTCCAGATGGAGATATTGATCTGACTCTCCTCAGTCGTCGGGAC ATTGAAGAAGAACTGACTAGGGGTGTTTTAGACATCCTTCTTCGTCATGAGCACGACTCCAAATTCGTCGTAGATGATATCCAATATATAGAAGCACAGG TCAAGATTATAAAATGTTCAGTGAATCGGATATCTGTGGATATTTCTTTCAATCAATTGTCCGGGCTTTCTGCCCTCTGCTTCCTGGAGCAGGTTGATCA AATTATTCAGAAAGATCATCTTTTCAAGAAGAGTATCATCTTGATCAAAGCCTGGTGCTATTACGAGAGCCGAACCCTTGGTGCATACCATGGATTGTTC TCGACATATGCTTTGGAGATATTGATGCTGCATCTATTCAACATGTTCCATTCATCACTAATCAGTCCTTTAGCTGTCCTGTATAAATTTCTGGATTACT ATAGCTCTTTCGACTGGGACAATTATGGCGTGTGCGTGAATGGGGTTTTTGCAATATCCTCTCTTCCAGATGTTGTTGTGGAGCCACCTGCAGGATGCGA AAGTCGATTGTTGCTTGGGCTGGAGTTTCTTCGCTATTGCCAAGAAACATTTGCAGTTCCGGTTAGAGCACTTGAAGATGGGATGCAAGAATTTGGAGTT AAGAGCATCAACATAGTGGATCCTTTGAAAGAGAGTAACAACTTGGGGCGAAGTGTTAGCAGAGGAAGCTTCAAACGGATACAATGCGCTCTTCACTACG GGTGTCAAAAGCTCCGAGAAATCCTTACCGGACCTGGAGAATCTATCGGAGCAGGACTGGAGAAGTTCTTCGTCAACACAATAGCGAGGAACGGAAGAGG ACAAAGACCGGATGCACACAATCCCGTTCCGGCATTCGGTACTGGAAGATCCGAAGCCTGTGATCTCCACGGCGACTACGCCAGGTGCCACAGCGGTCTG CTGCAGGGCCAGTGGTATCACAATTATCTGCTGCCGAATCATTTCCACCGCCTTGCTCCTTCGTCGTCATCTTCTCAAAACGTGTCGAGGAATCTCAGCG ACTTCCTCGCCCGGTTCTGGCAAGAAAGGCGGAATGTTTTCTCTCAAATAGGGATGGATTCCTTCATGCAACGAGAGATGGCGCCTCTGGTTTTCCCGTG TCCAGCAAGGAAATGTGTTCCTATCACTGGCACCAGTGGTTACGCTAGGCCGAAACCGAAAGGTACCGGCACGTACATCCCGGATGCGGTTAATTATGCA GAACTGTGGCCCAGGATGCGCTGGAATAGAAATTCTCCGCCTCAGAGCCAACAGTCCCAGTCACCAGAAGTCATATCTCTTACCGACTTCCAGCAAGAAT CCACCACTTCCTCCACAGACATGGATGTCGATACTCCTAGCGACTCCTCATCACCGACATTGGATGCAGCTTCGGTGGTTTCCGGACTAACTGGGGAGGC AACTGAGCAGGAGAATGAGGAGAGTCGTGGAGAAAGGTATGCACGTTTTTCTAGATGTTTCGATGTTCTTCACGACCATTTGATTTACGAACCGGTCCGG AACCCTCTTTCATTATTGGCTGATCTCTGTAGGGAAGCAAGTGAGGAAGATTCGACTGTTTGA
AA sequence Show only first row Show all	>Lus10034219 pacid=23175983 polypeptide=Lus10034219 locus=Lus10034219.g ID=Lus10034219.BGIv1.0 annot-version=v1.0 MGGLPLVLSSSSAFSFPRPELIPLSIDPELWSMAEHRIYEILCTTQPALESEKKREEAISYIIALIKAHYPTEVFAFGSVSLKTYLPDGDIDLTLLSRRD IEEELTRGVLDILLRHEHDSKFVVDDIQYIEAQVKIIKCSVNRISVDISFNQLSGLSALCFLEQVDQIIQKDHLFKKSIILIKAWCYYESRTLGAYHGLF STYALEILMLHLFNMFHSSLISPLAVLYKFLDYYSSFDWDNYGVCVNGVFAISSLPDVVVEPPAGCESRLLLGLEFLRYCQETFAVPVRALEDGMQEFGV KSINIVDPLKESNNLGRSVSRGSFKRIQCALHYGCQKLREILTGPGESIGAGLEKFFVNTIARNGRGQRPDAHNPVPAFGTGRSEACDLHGDYARCHSGL LQGQWYHNYLLPNHFHRLAPSSSSSQNVSRNLSDFLARFWQERRNVFSQIGMDSFMQREMAPLVFPCPARKCVPITGTSGYARPKPKGTGTYIPDAVNYA ELWPRMRWNRNSPPQSQQSQSPEVISLTDFQQESTTSSTDMDVDTPSDSSSPTLDAASVVSGLTGEATEQENEESRGERYARFSRCFDVLHDHLIYEPVR NPLSLLADLCREASEEDSTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10034219 [exp]	0	1
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	4.9	0.8360
AT1G57540			unknown protein		Lus10024000 [exp]	6.0	0.8242
AT5G06830			unknown protein		Lus10016277 [exp]	9.1	0.8600
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027353 [exp]	12.9	0.8397
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	13.1	0.8111
AT4G00290			Mechanosensitive ion channel p...		Lus10005121 [exp]	14.8	0.8100
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	16.0	0.8308
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	20.0	0.8379
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10027806 [exp]	25.8	0.7593
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	28.3	0.8114

Compare expression of checked genes

Lus10034219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.