Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09450 433 / 5e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 211 / 5e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 171 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 171 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 171 / 7e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 166 / 3e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 156 / 1e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 149 / 6e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 144 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 136 / 5e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029043 [exp] 734 / 0 AT5G09450 443 / 1e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 191 / 2e-55 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005855 [exp] 178 / 1e-50 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016229 [exp] 172 / 1e-49 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013047 [exp] 172 / 1e-48 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 172 / 1e-48 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 169 / 2e-47 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 166 / 2e-46 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 165 / 2e-45 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048500 [exp] 532 / 0 AT5G09450 446 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 209 / 1e-62 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G120900 [exp] 196 / 2e-57 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 188 / 1e-54 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 185 / 4e-53 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 180 / 2e-51 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 175 / 1e-49 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 174 / 2e-49 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 171 / 4e-48 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 170 / 9e-48 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034221 pacid=23176085 polypeptide=Lus10034221 locus=Lus10034221.g ID=Lus10034221.BGIv1.0 annot-version=v1.0 ATGTCCAGGAATCTCATAACCAACGGCGGCCGGATCCTCAATCCTCGAGAGAAAGTGATTCACGGCCGATTTTTCTCTTCAGCCGCTTCGGGAAGTCAGC ATGACGTCGTCGCTATCGATGAAGAAGATGAGTCTCACGAATCTGGCAAAGGAATCAATGGCGACGACTTGAGGAGCAGGATTTTGAGGCTTAGACTACC AAAACGAAGCGCCACCAATATCATTGACAGATGGATCGGCGAGGGGAATCCTGTCACTTCCTCTGAGCTGCGAGCTATCTCTAGAGAGCTCCGCAAGTCT CAACGATACAAGCACGCTCTCGAGATATCGGAGTGGATGGTTTCACGAGAGGGGTTTGAGGTATTGGACTCTGACTATGCTACCCGGATCGATTTGATGA CAAAAGTTTTCGGAATAGATGCTGCAGAACGCTACTTCGAGAGCTTACCACCTGCAGGGAAAACTGCCGAGACATACACTGCCCTACTCCACTCTTATGC TGGGGTGAAAATGATCGATAAGGCCGAGGAACTTTACGAGAGAATGAAGGAATCAGAAAACTTGTGCTTTACTGCCGTGACATACAATGAGATGATGACT CTGTATATGTCAGTTGGCAAGTTGGAGAAAGTTGCTTCAGTGGTTCAAGAACTCAAAGATCGGAACGTCGCTCCTGATATCTTCACTTACAATCTCTGGA TAAGCTCCTGTGCTGCAAATCTAGATATTGATGAAGCTAGAAGGGTTTTGGATGAAATGAGCTCGAATGCCGGTTGCAACGATGACTGGTTAAGATACAT CAGAATTGCTAATTTATACGTTATGGCTGGTCATATAGTCAACGGCGAGACCGGTGCTGTTGTGGAAGCTGACAAAAGCATTACGCAAAGAGAGTGGATT ACGTACGACTTTCTCATCATACTGTATGCTGGTTTACAGAATAAGGAGAGAATCGATCAGATATGGAAGTCCTTGAGACTGACTAAGCAAAAAATGACGA GCAGAAACTATGTTTGCGTTCTTTCCTCGTATCTGGTTCTTGGACATTTGAAAGAAGCAGGAGAGGTTATAGACCAGTGGAAAAACTCAACTGAAACCGA GTTTGATGCCTCTGCATGTAGCAGGCTTCTGGATGCATTGTCTGGCGATGAACTAACTGAAGTTTCTACCGACTTCCGCTTGCTCTTGATCGAGAGGAAC TGCGATCCCACAAACTCGACAGAGTAG
AA sequence Show only first row Show all	>Lus10034221 pacid=23176085 polypeptide=Lus10034221 locus=Lus10034221.g ID=Lus10034221.BGIv1.0 annot-version=v1.0 MSRNLITNGGRILNPREKVIHGRFFSSAASGSQHDVVAIDEEDESHESGKGINGDDLRSRILRLRLPKRSATNIIDRWIGEGNPVTSSELRAISRELRKS QRYKHALEISEWMVSREGFEVLDSDYATRIDLMTKVFGIDAAERYFESLPPAGKTAETYTALLHSYAGVKMIDKAEELYERMKESENLCFTAVTYNEMMT LYMSVGKLEKVASVVQELKDRNVAPDIFTYNLWISSCAANLDIDEARRVLDEMSSNAGCNDDWLRYIRIANLYVMAGHIVNGETGAVVEADKSITQREWI TYDFLIILYAGLQNKERIDQIWKSLRLTKQKMTSRNYVCVLSSYLVLGHLKEAGEVIDQWKNSTETEFDASACSRLLDALSGDELTEVSTDFRLLLIERN CDPTNSTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	1.4	0.7739
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	4.6	0.7658
AT5G05800			unknown protein		Lus10007443 [exp]	7.2	0.7321
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	9.5	0.7513
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10020118 [exp]	16.0	0.7702
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	16.7	0.7594
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031801 [exp]	17.8	0.6371
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	18.4	0.7374
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	19.0	0.7387
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10019197 [exp]	20.8	0.7070

Compare expression of checked genes

Lus10034221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.