Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10920 369 / 5e-131 MSD1, MEE33, ATMSD1 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) AT3G56350 322 / 3e-112 Iron/manganese superoxide dismutase family protein (.1) AT5G23310 117 / 2e-31 FSD3 Fe superoxide dismutase 3 (.1) AT5G51100 107 / 1e-27 FSD2 Fe superoxide dismutase 2 (.1) AT4G25100 94 / 2e-23 ATFSD1, FSD1 ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012883 [exp] 419 / 3e-148 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10030534 [exp] 296 / 5e-102 AT3G10920 241 / 8e-81 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Lus10017378 [exp] 100 / 7e-25 AT5G23310 368 / 5e-129 Fe superoxide dismutase 3 (.1) Lus10026881 [exp] 100 / 9e-25 AT5G51100 373 / 3e-130 Fe superoxide dismutase 2 (.1) Lus10010174 [exp] 95 / 6e-23 AT5G23310 359 / 1e-125 Fe superoxide dismutase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092600 [exp] 363 / 1e-128 AT3G10920 370 / 6e-132 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.019G057300 [exp] 360 / 2e-127 AT3G10920 360 / 6e-128 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2) Potri.005G089600 [exp] 110 / 5e-29 AT5G23310 340 / 1e-118 Fe superoxide dismutase 3 (.1) Potri.015G110400 [exp] 102 / 7e-26 AT5G51100 335 / 3e-115 Fe superoxide dismutase 2 (.1) Potri.012G112301 [exp] 69 / 2e-14 AT5G51100 221 / 2e-72 Fe superoxide dismutase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02777 [flax] [poplar] Sod_Fe_C Iron/manganese superoxide dismutases, C-terminal domain PF00081 [flax] [poplar] Sod_Fe_N Iron/manganese superoxide dismutases, alpha-hairpin domain
Representative CDS sequence Show only first row Show all	>Lus10034222 pacid=23175836 polypeptide=Lus10034222 locus=Lus10034222.g ID=Lus10034222.BGIv1.0 annot-version=v1.0 ATGGCGCTCCGTTCTCTATTCTCACGCAGATCCGTCGCCGGATTATCGGCCGTTTCCAGGACCACTTCTTCTGCCCTCGATGCCAAAATCCTAGGGTTCA GCGCACTGTCATCGCAATCCCGAGGTCTGAAGACAGCCTCTCTTCCCGATCTCCCGTACGATTATGGCGCCCTGGAGCCCGCGATCAGCGGAGAGATTAT GCAGATTCATCACCAGAAGCACCACCAGACCTATGTCACCAACTACAACAAGGCTCTCGAGCAGCTCCACGAAGCCACCCTCAAGGGCGATGTTGGTACC GTTGTTAAGCTCCAGAGCGCCATCAAGTTCAACGGCGGAGGTCATGTTAACCACTCAATCTTTTGGAACAACCTTGCCCCAGTTCGTGACGGAGGTGGCG AACCCCCACACGGTTCATTGGGCTGGGCAATTGACAACCATTTCGGCTCCATGGATGCATTGGTACAAAAGATGAATGCTGAAGGTGCTGCACTCCAGGG CTCTGGATGGGTGTGGCTTGGTCTTGACAAGGAGACAAAGAAGCTTGTGGTTGATACCACTGCAAACCAGGATCCACTGGTCACTAAGGGGGCATCTTTG ATCCCTTTACTGGGTATTGATGTCTGGGAGCATGCATACTACTTACAGTACAAGAATGTGAGGCCTGATTACCTGAAGAACATATGGAAAGTGATGAACT GGAAGCACGCCAGCGGAATCTTTGAACAAGAATGCCCTTGA
AA sequence Show only first row Show all	>Lus10034222 pacid=23175836 polypeptide=Lus10034222 locus=Lus10034222.g ID=Lus10034222.BGIv1.0 annot-version=v1.0 MALRSLFSRRSVAGLSAVSRTTSSALDAKILGFSALSSQSRGLKTASLPDLPYDYGALEPAISGEIMQIHHQKHHQTYVTNYNKALEQLHEATLKGDVGT VVKLQSAIKFNGGGHVNHSIFWNNLAPVRDGGGEPPHGSLGWAIDNHFGSMDALVQKMNAEGAALQGSGWVWLGLDKETKKLVVDTTANQDPLVTKGASL IPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKHASGIFEQECP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	2.4	0.9180
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Lus10007534 [exp]	6.2	0.8938
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	9.5	0.8947
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10018872 [exp]	10.7	0.8162
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	13.0	0.8682
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	14.9	0.8777
AT5G08060			unknown protein		Lus10017854 [exp]	15.2	0.8648
AT2G33730			P-loop containing nucleoside t...		Lus10015187 [exp]	15.9	0.8857
AT2G42310			unknown protein		Lus10042351 [exp]	18.8	0.8351
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	19.3	0.8782

Compare expression of checked genes

Lus10034222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.