Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56340 130 / 4e-40 Ribosomal protein S26e family protein (.1) AT2G40590 129 / 2e-39 Ribosomal protein S26e family protein (.1) AT2G40510 129 / 2e-39 Ribosomal protein S26e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029042 [exp] 162 / 2e-52 AT2G40510 182 / 2e-60 Ribosomal protein S26e family protein (.1) Lus10030533 [exp] 154 / 2e-49 AT2G40510 185 / 1e-61 Ribosomal protein S26e family protein (.1) Lus10012883 [exp] 159 / 3e-48 AT3G10920 356 / 1e-123 MATERNAL EFFECT EMBRYO ARREST 33, ARABIDOPSIS MANGANESE SUPEROXIDE DISMUTASE 1, manganese superoxide dismutase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057000 [exp] 143 / 5e-45 AT3G56340 132 / 6e-41 Ribosomal protein S26e family protein (.1) Potri.013G093700 [exp] 140 / 4e-44 AT3G56340 130 / 3e-40 Ribosomal protein S26e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01283 [flax] [poplar] Ribosomal_S26e Ribosomal protein S26e
Representative CDS sequence Show only first row Show all	>Lus10034223 pacid=23175911 polypeptide=Lus10034223 locus=Lus10034223.g ID=Lus10034223.BGIv1.0 annot-version=v1.0 ATGCCTTTCAAGCGTAGGAACGGAGGTCGCAACAAGCAGGGACGCGGCCACACGAAGTTCATCCGCTGCTCCAACTGCGGCAAATGCTGCCCTAAGGACA AGGCGATCAAGAGATTCCTTGTGAGGAACATTGTCGAGCAGGCTGCTGTTAGAGATGTTCAGGAGTCATGCGTCTTTGATGGATATGTTCTCCCAAAGCT ATATGTTAAGATGCAGTACTGCGTCTCATGTGCCATCCACTCTCGCGTTGTGAGGGTCCGATCAAGCACTGATCGTAGGAAGCGTGACCCACCCCAGCGT TTCCAGAGGCGCAAGGAGGATGCTAAGCCTGGTCAAGGTGGACCTGCTGGTCCTGGTGCTCGCCCTGGTGCTCCTCCAGTTGCTGCCCGTGCTTAA
AA sequence Show only first row Show all	>Lus10034223 pacid=23175911 polypeptide=Lus10034223 locus=Lus10034223.g ID=Lus10034223.BGIv1.0 annot-version=v1.0 MPFKRRNGGRNKQGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQESCVFDGYVLPKLYVKMQYCVSCAIHSRVVRVRSSTDRRKRDPPQR FQRRKEDAKPGQGGPAGPGARPGAPPVAARA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	0	1
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	1.7	0.9656
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031704 [exp]	2.4	0.9658
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	2.8	0.9725
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	3.2	0.9607
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	4.0	0.9611
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	4.9	0.9561
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	6.0	0.9609
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	6.6	0.9562
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	6.7	0.9539
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	7.1	0.9524

Compare expression of checked genes

Lus10034223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.