Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) AT4G23630 159 / 9e-48 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT4G11220 157 / 2e-47 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT2G46170 155 / 2e-46 Reticulon family protein (.1.2) AT3G61560 154 / 4e-46 Reticulon family protein (.1.2) AT1G64090 148 / 8e-44 RTNLB3 Reticulan like protein B3 (.1.2) AT5G41600 147 / 2e-43 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G18260 129 / 4e-37 Reticulon family protein (.1) AT2G15280 124 / 3e-35 Reticulon family protein (.1.2) AT3G10260 125 / 4e-35 Reticulon family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029041 [exp] 249 / 9e-85 AT3G10915 170 / 1e-54 Reticulon family protein (.1.2.3.4.5.6) Lus10027548 [exp] 151 / 5e-45 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10014948 [exp] 149 / 2e-44 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 147 / 2e-43 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10032451 [exp] 145 / 3e-43 AT3G18260 268 / 9e-92 Reticulon family protein (.1) Lus10027546 [exp] 146 / 4e-43 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10032313 [exp] 145 / 1e-42 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10029822 [exp] 143 / 6e-42 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Lus10020718 [exp] 142 / 7e-42 AT3G10260 325 / 2e-113 Reticulon family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057400 [exp] 303 / 8e-105 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.012G035600 [exp] 154 / 3e-46 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 152 / 2e-45 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 151 / 4e-45 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 149 / 2e-44 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G055600 [exp] 143 / 4e-42 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.001G300400 [exp] 142 / 4e-42 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.014G091200 [exp] 142 / 2e-41 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 141 / 2e-41 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.013G160900 [exp] 135 / 3e-39 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10034224 pacid=23175982 polypeptide=Lus10034224 locus=Lus10034224.g ID=Lus10034224.BGIv1.0 annot-version=v1.0 ATGGCGGAGAATTCAAGAGACGCTGAGGCAACGGTGGACGCTGATCACGATGCGAGAAATGATGTCTCCTCAGCTTCCACTTCTTCCGGCTACCGATTGT TCGGCCGGCAGGTTCCTCTTCACCAGTTCATGGGCGGCGGCAGAGCGGCTGATGTACTATTGTGGAAGCGACGGAGGATCTCGTTCGGCGCGATCGTGGC GGTGACATTTGCGTGGTTCTTGTTCGAACGATCTGGATTGCCGTTCTTAACAGTTAGCTCTGACGTTCTGCTGACTCTGATCGTCATGTTGTTTGCTCAT AACAACTATGCTGCAATGAGAAACAAGCAGCCACAGTCGTTGCCGGAGCTAGTCGTTTCGGAGGAGATGGTTAACAGCGTTGCAGCATCTTTCCGAGTTA AGATAAACAACATGCTCCTCATGGCTCATGAGATCACTCTTGGCAAAGACTTCAGGCTCTTCTTTAAGGTGGTTGTATCATTGTGGCTCTTATCTGCAGT CGGTAGCTACTTCTCGTTCTTCACTTTAGCCTACATAGGAACAGTATTGTCGATCACAGTTCCGGCGCTGTATAGCAAGCACGAAGAGAGAGTGGATAGA TGTTTCGGGATGATCCAGAAAAGGTTCAAGATAGTCGACGAGAGTGTTGTTAGCAGAATCCCGCAGGGGTTATCAATCAAGGACAAGGATACGTAA
AA sequence Show only first row Show all	>Lus10034224 pacid=23175982 polypeptide=Lus10034224 locus=Lus10034224.g ID=Lus10034224.BGIv1.0 annot-version=v1.0 MAENSRDAEATVDADHDARNDVSSASTSSGYRLFGRQVPLHQFMGGGRAADVLLWKRRRISFGAIVAVTFAWFLFERSGLPFLTVSSDVLLTLIVMLFAH NNYAAMRNKQPQSLPELVVSEEMVNSVAASFRVKINNMLLMAHEITLGKDFRLFFKVVVSLWLLSAVGSYFSFFTLAYIGTVLSITVPALYSKHEERVDR CFGMIQKRFKIVDESVVSRIPQGLSIKDKDT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	1.0	0.9596
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	2.2	0.9529
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	2.4	0.9548
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	2.6	0.9489
AT5G41810			unknown protein		Lus10001907 [exp]	4.2	0.9545
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	4.5	0.9535
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	4.5	0.9485
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015517 [exp]	4.7	0.9387
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	4.9	0.9486
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	5.0	0.9377

Compare expression of checked genes

Lus10034224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.