Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40600 285 / 2e-98 appr-1-p processing enzyme family protein (.1) AT1G69340 71 / 2e-14 appr-1-p processing enzyme family protein (.1) AT5G01310 40 / 0.0008 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029039 [exp] 318 / 5e-112 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10034226 [exp] 317 / 1e-111 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10029040 [exp] 233 / 2e-79 AT2G40600 184 / 2e-59 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 76 / 4e-16 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 74 / 1e-15 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 74 / 2e-15 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092700 [exp] 286 / 2e-99 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 74 / 1e-15 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 74 / 3e-15 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.016G120200 [exp] 40 / 0.001 AT5G01310 877 / 0.0 APRATAXIN-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10034225 pacid=23176032 polypeptide=Lus10034225 locus=Lus10034225.g ID=Lus10034225.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCGCTTCGGCTTTCCAAATGTCTGGTTCCACTTTTCTCAAGATCCACAAAGGGGACATCACCAAGTGGTTCGTCGATCGCTCCACGGATG CCATTGTTAATCCAGCTAACGAGAGAATGCTTGGTGGTGGAGGTGCAGATGGAGCTATCCATAGTGCTGCTGGGCCAGAACTGCGACGGGTTTGCTTCAA GGTCCCTGAAGTGAGGCCTGACGTTCGCTGCCCGACAGGAGAAGCTAGAATTACTCTAGGATTCAAGCTGCCAGCTTATTATGTCATTCACACCGTTGGA CCGATTTATCGCACTGATCCCAACCCTGCAGCATCTCTCAGGAAAGCATATCTGCACTGCTTGATTGTAGCGAAATTTAACAACATCAAGTACGTGGCGT TCCCCGCTATATCCTGTGGTGTTTACGGGTATCCTTTTGAAGAAGCTGCCGATGTAGCCATATCGACAATCAAAGAGTTTCGTCACGAATTCAAAGAGGT GCATTTTGTTCTGTTTGCGGACGACACATACGATGTTTGGGTCAAGAAGGCAAAGGAATTGCTCCAAGACTAG
AA sequence Show only first row Show all	>Lus10034225 pacid=23176032 polypeptide=Lus10034225 locus=Lus10034225.g ID=Lus10034225.BGIv1.0 annot-version=v1.0 MASSASAFQMSGSTFLKIHKGDITKWFVDRSTDAIVNPANERMLGGGGADGAIHSAAGPELRRVCFKVPEVRPDVRCPTGEARITLGFKLPAYYVIHTVG PIYRTDPNPAASLRKAYLHCLIVAKFNNIKYVAFPAISCGVYGYPFEEAADVAISTIKEFRHEFKEVHFVLFADDTYDVWVKKAKELLQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	0	1
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	2.0	0.9118
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	2.0	0.9280
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	3.5	0.9070
AT2G40600			appr-1-p processing enzyme fam...		Lus10034226 [exp]	5.3	0.8612
					Lus10023874 [exp]	7.3	0.8845
AT2G45910			U-box domain-containing protei...		Lus10036359 [exp]	8.0	0.8417
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	8.9	0.8859
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	9.9	0.8655
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	13.0	0.8568
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	17.0	0.8703

Compare expression of checked genes

Lus10034225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.