Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40600 255 / 2e-86 appr-1-p processing enzyme family protein (.1) AT1G69340 63 / 1e-11 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029039 [exp] 321 / 3e-113 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10034225 [exp] 256 / 8e-88 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10029040 [exp] 125 / 8e-37 AT2G40600 184 / 2e-59 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 60 / 2e-10 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 60 / 2e-10 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 59 / 3e-10 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G092700 [exp] 259 / 8e-89 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 60 / 2e-10 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 59 / 3e-10 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10034226 pacid=23176099 polypeptide=Lus10034226 locus=Lus10034226.g ID=Lus10034226.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCGCAGCTGGAGAAGACAACTCCTCCTCCACTTCCGGTTTCCCAATGTCTGGCTCCAGTCTTCTCAAGATCAACAAAGGCGACATCACCC AGTGGTTCGTCGATGGCTCCTCCGATGCAATTGTTAATCCAGCTAACGGGAGAATGCTTGGTGGTGGAGGTGCTGATGGAGCTATTCATAGAGCTGCTGG GCCAGAACTGAGGGAAGCTTGCTTCAAGGTCCCTGAACTGACGCCTGGCCTCCGCTGCCCAACCGGACAAGCTAGAATTACTCCAGGATTCAAGTTGCCA GCTTCCCATGTCATTCACACCGTTGGACCGATCTATGACACTGATCCCAACCCTCAAGCATCCCTCAAGAATGCGTACAAGAACAGCTTGAGTGTTGCAA GAGATAGCAACATCAAGTACGTGGCTTTCCCGGCTATATCCTGTGGCATTTACGGGTATCCTTTCGAAGAAGCTGCCGGTGTGGCTATATCGACGATCAA AGAGTTTGCACATGACTTCAAAGAGGTGCATTTCGTTCTGTTTTCGGATGACATATACGATGTGTGGGTGAAGAAGGCAAAGGAGTTGCTCCAAGACTAA
AA sequence Show only first row Show all	>Lus10034226 pacid=23176099 polypeptide=Lus10034226 locus=Lus10034226.g ID=Lus10034226.BGIv1.0 annot-version=v1.0 MASSAAGEDNSSSTSGFPMSGSSLLKINKGDITQWFVDGSSDAIVNPANGRMLGGGGADGAIHRAAGPELREACFKVPELTPGLRCPTGQARITPGFKLP ASHVIHTVGPIYDTDPNPQASLKNAYKNSLSVARDSNIKYVAFPAISCGIYGYPFEEAAGVAISTIKEFAHDFKEVHFVLFSDDIYDVWVKKAKELLQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40600			appr-1-p processing enzyme fam...		Lus10034226 [exp]	0	1
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	5.3	0.8612
AT2G40600			appr-1-p processing enzyme fam...		Lus10029039 [exp]	6.6	0.8366
AT2G03270			DNA-binding protein, putative ...		Lus10042360 [exp]	14.5	0.8456
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10020627 [exp]	14.7	0.8480
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	26.5	0.8607
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	28.8	0.8133
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	31.7	0.7798
					Lus10007207 [exp]	38.3	0.7795
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	41.2	0.8192
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	44.7	0.8430

Compare expression of checked genes

Lus10034226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.