Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 387 / 2e-137 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 365 / 6e-129 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 350 / 8e-123 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 346 / 3e-121 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 342 / 5e-120 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT2G39700 327 / 8e-114 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G02260 325 / 3e-113 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G56320 321 / 2e-111 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G37640 320 / 6e-111 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 319 / 1e-110 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029038 [exp] 457 / 3e-165 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10008603 [exp] 369 / 3e-130 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 362 / 1e-127 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009917 [exp] 353 / 4e-124 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10036763 [exp] 346 / 2e-121 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 344 / 2e-120 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 341 / 2e-119 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040286 [exp] 327 / 8e-114 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10033011 [exp] 327 / 1e-113 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057500 [exp] 389 / 2e-138 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 382 / 9e-136 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.016G135200 [exp] 372 / 7e-132 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 366 / 2e-129 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.010G167200 [exp] 350 / 7e-123 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 347 / 1e-121 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 339 / 1e-118 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.004G123200 [exp] 338 / 3e-118 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 333 / 1e-116 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.013G060800 [exp] 332 / 6e-116 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10034227 pacid=23175902 polypeptide=Lus10034227 locus=Lus10034227.g ID=Lus10034227.BGIv1.0 annot-version=v1.0 ATGACTTCTTCTTCCATTCCTACAATGGTGTCCTCTGTTCTTTTGCTAGTGGCGATCACTGTCTCCGGCGCTTTTGCCGACTACGGCGGATGGGTGGGCG GCCACGCCACCTTCTACGGCGGCGGCGATGCTTCTGGCACAATGGGAGGGGCTTGTGGATATGGGAACTTGAACAGCCAAGGGTACGGTACAAACACTGC AGCTTTGAGTACCGCATTGTTCAACAATGGGCTGAGCTGCGGAGCTTGCTATGAGCTCCAATGCAACAACGACCCGAGATGGTGCCTCCCTGGCTCGATC ATCGTCACCGCCACTAATTTCTGCCCTCCGAACTTGGGGTTGTCCAATGACAACGGTGGATGGTGTAACCCTCCGCTTGAGCATTTTGATTTGGCTGAGC CGGCTTTCCTCCAGATTGCTCAGTACAGGGCAGGGATCGTTCCCGTCTCTTTCAGAAGGGTGCCCTGCATGAAGAGAGGAGGGGTGAGGTTCACTATCAA CGGGCATTCGTATTTCAACCTGGTGCTGGTCACGAACGTGGGAGGTGCCGGAGACGTGCGAAGCGTTTCGATTAAGGGATCAAAGTCGTCGGGTTGGCAG AGCATGTCGAGGAATTGGGGTCAGAACTGGCAGAGCAACTCGTACATGAATGGCCAGAGCTTGTCTTTCCAAGTTACCACTAGCGATGGCCGGACCTTGA CCAGCTACAACGTGGCCCCCGCAGGATGGCAGTTTGGCCAGACCTTCGAAGGCCTTCAGTTCTAA
AA sequence Show only first row Show all	>Lus10034227 pacid=23175902 polypeptide=Lus10034227 locus=Lus10034227.g ID=Lus10034227.BGIv1.0 annot-version=v1.0 MTSSSIPTMVSSVLLLVAITVSGAFADYGGWVGGHATFYGGGDASGTMGGACGYGNLNSQGYGTNTAALSTALFNNGLSCGACYELQCNNDPRWCLPGSI IVTATNFCPPNLGLSNDNGGWCNPPLEHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKRGGVRFTINGHSYFNLVLVTNVGGAGDVRSVSIKGSKSSGWQ SMSRNWGQNWQSNSYMNGQSLSFQVTTSDGRTLTSYNVAPAGWQFGQTFEGLQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	1.0	0.9054
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	1.7	0.8706
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	2.6	0.8630
					Lus10038294 [exp]	2.8	0.8732
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10007509 [exp]	4.1	0.8323
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	5.2	0.8605
AT3G29680			HXXXD-type acyl-transferase fa...		Lus10029798 [exp]	6.7	0.8352
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	8.4	0.8587
AT1G29530			unknown protein		Lus10004585 [exp]	9.8	0.7702
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	10.0	0.8682

Compare expression of checked genes

Lus10034227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.