Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 578 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 244 / 5e-69 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G02780 206 / 7e-56 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 128 / 8e-31 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 121 / 1e-28 AtTPS02 terpene synthase 02 (.1) AT1G33750 117 / 3e-27 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 115 / 1e-26 AtTPS10 terpene synthase 10 (.1) AT1G70080 115 / 2e-26 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 112 / 1e-25 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 112 / 1e-25 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034232 [exp] 1010 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 856 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 833 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 785 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 768 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 754 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 744 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 643 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 483 / 5e-158 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 690 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 685 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 293 / 6e-87 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 208 / 1e-56 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 198 / 4e-53 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G016500 [exp] 141 / 3e-35 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 140 / 5e-35 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 139 / 2e-34 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 139 / 2e-34 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 136 / 2e-33 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10034229 pacid=23176042 polypeptide=Lus10034229 locus=Lus10034229.g ID=Lus10034229.BGIv1.0 annot-version=v1.0 ATGAACAGGAAAGACACAATCCGGTGCGGTTCTGAAGGGAGTAGTACTAAATCGCTACTAGTCACAAGATCAGTGACCAGCAAATCCTTAAGCCTGGTTG GCACTCAGAATATTGCGGTCGATCATGATTTGAAAGAGAGGAAACACAGGTTGTTCGACAAGGCTGAACTTTCAGTGTCCTCGTACGACACCGCATGGGT GGCAATGGTCCCCTCGTCGTCGTCTTCTTTGTCGAGTCCAGTTCCTTACTTTCCGGACAGCTTGAATTGGATCTTGGAGAATCAACAAATGGATGGATCC TGGGGTGTTCCTACTCATATTAGAGACCCTCTCCTTGTTAAGGACACACTCTCCTCGACTATGGCTTGTGTTCTTGCTCTTAAACGGTGGCGCATTGGAG ACCAACACATTCACGGCGCCCTTGAATTTCTGGACCTAAACTCGGCTTACCTCAACGACCCAACCCAGAAAACCCCAATCGGGTTCGACCTAACATTTCC CGCCATGATTCTAACCTCCGTGAAGGACTTCAATTTGAATCTCCCGCTAAAATCAGCCAACATCGACGCCATGATCCGCAACAGAGAATCCATGCTCAGC AACTCCTGCAACAATTCGCAAGGAAGAAATGCCTACTTGGCTTACATCTCTGAAGGAATCGGAGATCTACAAGACTGGAGAACTGCCATGAAATTCCAGA GGAACAACGGTTCCCTCTTCAACTCTCCTTCCGCCACCGCCGCCGCCTTCATCCACCTCCAGGACCCTGACTCCCTCCGCTACCTCCGATCCGTCGTCGA CGGAAATTCCGCAGTTACAGCGGTTTACCCTAACGGTATTCAAGCTCGTCTCTGCCAAATCGATGCTGCTGAGAGCTTAGGGATCAGTGGCCATTTCCGA GATGAAATCGAGGCGACATTGGACGAAATCTACAGATGTTGGCAGCAGGGAGATGAAGAGATCTTCCTCGATCCCACAACTTGCGCCATGGCGTTTCGAA TATTGCGGCTCAATCGATACACTGTCTCCTCAGATGTGTTCGATCGATTCACAGAAGATCGGTTTTGGAACGACACCTTAGAAGGATACTTGAAAGATGA GCGAGCTGTGTTGGAATTACACAAAGCTTCCAACCTGATTTATCAGGAAGATACAATTCTAGAGCAGCAGCAGCTGTGGACACGTCAGTTCCTCATCAAA TTACTTGATGAACAGTCCAGTACACCAGAGGTTCGTAACGTTCTGAGTTATCCATTCCGGTCTGATCTCGAACCAGTGGCTCGCAAAAGAAACATAGAGC AGTTCTGGACACAAGATAACAATACTAGGGTTCTTAAATCCTCCTTCAGCTGCCCGAAATCGTGGGGCAAAGATATGGTGAAACTCGCAGCGGGAGACTT CAACTCTCTCCAGTCCTCATACCGCAACGAACTGCAACATCTGATGCTGTGGCTTGAAGAGAAGGGGCTAGATGAGATGAGGTTAGCCAAGGTGAGAATG GAGTATTGCTACTTCAGTGCTGCTGCAACTTTCTCCAATCCAGATCACTCCGATGCCCGAATCCTGTTCTCCAAACACGCTCTTCTTGTCTCTGTCGTTG ATGACTTATTCGACATGTTTGGGACGCACGAGGAGCTTCTGAACATCGTAGACCTCTTTGAGAAGTGGGATGTGAATGCACCAAGGGAAGGAGAGTTCAG TTCGGAGCTGGTGAAGACGCTCTACTGGGCGATCCACAGCACGATTTGCGAGAATGTCGAGAAAGCGTTCGCTTTCCAGGGTCGGAGTATAATGGATCAT CTCGTCGAACTCTGGGTGGAGATGCTTCAAGGAATGATGAAAGAAGCAGAGTGGTCGAAATCAAGCATAATGCCATCGCTTAAAGAGTACTCTACAAATG CAACCATTACGCTTGGTGTAGGTGCATTCCTGGTCCCGGCTCTCTACCTGGCTGGGCATGAGCTTCCTGACCGAATCATCAAGGGTCCGAAGTTCGAGAA GCTATTCGTATCCACGAGCAATTGTGGTCGGTTATTGAACGATTCTAGAGGCTTCGAGAGGGAAGCAGAGCAAGGCAAACCGAATGCAGTGCTGTTGAGA ATGGGTCCCGACACCACTGAAAAGGAAGCCATTGATGAAGTCGATGGAATCATAGAGAATCTGACTCGAGAAGTGCTCGAGTTAGCTCTCAATGACGAAG GTTTTGGTGAGGTTCCGAGTGACATCAGGGACATGTTCTGGAAATCGATCCAGGTGTTCTACCTGTTCTACATGAAGGAGGATTTGTACCACGCTAGCAC TAAGCTGGTCAAAGTTGTTGACTCTGTGATTAACCAACCCATCTCTCGTGACTCGGTTAATTTAAATTAA
AA sequence Show only first row Show all	>Lus10034229 pacid=23176042 polypeptide=Lus10034229 locus=Lus10034229.g ID=Lus10034229.BGIv1.0 annot-version=v1.0 MNRKDTIRCGSEGSSTKSLLVTRSVTSKSLSLVGTQNIAVDHDLKERKHRLFDKAELSVSSYDTAWVAMVPSSSSSLSSPVPYFPDSLNWILENQQMDGS WGVPTHIRDPLLVKDTLSSTMACVLALKRWRIGDQHIHGALEFLDLNSAYLNDPTQKTPIGFDLTFPAMILTSVKDFNLNLPLKSANIDAMIRNRESMLS NSCNNSQGRNAYLAYISEGIGDLQDWRTAMKFQRNNGSLFNSPSATAAAFIHLQDPDSLRYLRSVVDGNSAVTAVYPNGIQARLCQIDAAESLGISGHFR DEIEATLDEIYRCWQQGDEEIFLDPTTCAMAFRILRLNRYTVSSDVFDRFTEDRFWNDTLEGYLKDERAVLELHKASNLIYQEDTILEQQQLWTRQFLIK LLDEQSSTPEVRNVLSYPFRSDLEPVARKRNIEQFWTQDNNTRVLKSSFSCPKSWGKDMVKLAAGDFNSLQSSYRNELQHLMLWLEEKGLDEMRLAKVRM EYCYFSAAATFSNPDHSDARILFSKHALLVSVVDDLFDMFGTHEELLNIVDLFEKWDVNAPREGEFSSELVKTLYWAIHSTICENVEKAFAFQGRSIMDH LVELWVEMLQGMMKEAEWSKSSIMPSLKEYSTNATITLGVGAFLVPALYLAGHELPDRIIKGPKFEKLFVSTSNCGRLLNDSRGFEREAEQGKPNAVLLR MGPDTTEKEAIDEVDGIIENLTREVLELALNDEGFGEVPSDIRDMFWKSIQVFYLFYMKEDLYHASTKLVKVVDSVINQPISRDSVNLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	0	1
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	1.0	0.9883
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	3.9	0.9854
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	4.0	0.9873
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	4.5	0.9811
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10000193 [exp]	8.5	0.9791
AT3G62650			unknown protein		Lus10017613 [exp]	8.9	0.9804
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	9.5	0.9778
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	10.2	0.9821
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	11.8	0.9558
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	11.8	0.9740

Compare expression of checked genes

Lus10034229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.